Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed05g3734 | ATGGACTTTCTCACTCTTCTCTTTCTCCTCCTTGTTGCTTTCTTCATCCTCCAACAGCTCAAAACCCGCCGGAAAAATCTGCCGCCGTCTCCGCCGTGTGTTCCGGTCATCGGCCACCTCCACCTCCTCAAACGCCCCATCCACCGGAATTTTCAAACCATCGCCGCCAAGTACGGCCCCATTTTCACCCTCCGACTCGGATCTCGCCTTGCCCTCGTTGTCTCTTCCCTCCAAATCGCCGAACAATGTTTCACTACAAACGACGTCGTCTTCGCCAACCGCCCCCGCCTGCTCATCAGCCGTTACCTGGGCTACAACTGCACCACCATCTCCACCGCCCCGTACGGCGACTACTGGCGGAACCTCCGCCGCCTCTCCGCCGTGGAGATCTTCTCGACGGCAAAACTAAACGCATCTCTGTGCATCCGCAAGGAAGAAATCCGGCGATTCCTCCTGAAACTCCACTCGGAATGGTTCGCCAAAGCGGAGCTGAAATCGATGTTTTCGGAACTGAGCTTCAACGTGGTGATGCGGGTGGTGGCCGGAAAACGGTACTACGGCGAGGAGGTTTCCGACGAGGCGGAGGCGAGGGAGTTCCGGGAGCTGATGGAGGAGATTTCGGCCCAGGGCGGGGCTTCGCATTGGGAGGATTTTATGCCGATCTTGAAATGGATCGGGCGCGGTGGATTCGAGAACAGTTTGAAGAAATCCGGGGAAAGGGCGGATCGGTTTATGCAGGCGTTGATTGAAGAACGCCGGAATTTGAAACTGCTCGGAACTGAAAAACAGAGGAATCTGCTTGATCGGCTTTTGGAGTTGCAGCTTTCTGAGCCGGAATATTACTCCGATCACACAATTAAAGGGATCGTTCTGGTGTTGTTGCGTGCCGGAACAGATACATCATCTGTGACTTTGAATTGGGCAATGACTCAACTACTCAACAATCCGGAAATGTTGGCCAAAGCAAGAGCTGAGATAGACACCAAAATCGGCCAAGATCGCCCCATCAACGAAGGAGATCTCCCCAACCTCGACTACCTCCAAGCCATTATTTCCGAGACCTTCCGCCTTCACCCTGCCGCACCGATGCTCCTCACACACTACTCCTCTGACGATTGCGTCGTTGCAGGCTACGACATTCCTCGTGGGACAACGTTGTTGGTCAATGCCTGGGCCATTCACCGAGACCCGAAGTTGTGGGACGACCCGACGAGCTTCAACCCAGAGAGGTTTTTTGGGCCAGGAAATGAGTTGAACTCAAACAAAATAATTCCTTTTGGGATTGGAAGGAGGGCTTGTCCTGGTGCGAGCATGGCTCAACGTTTCATAGGATTGACTTTGGGGCTATTGATTCAATGCTATGAGTGGAAAAAGGATGGAGAAGAAAATGTGGACATGGCCGAAGGTGGAGGCATTACTATTCATAAAGTCAAGCCTTTGGAAACTATGTGCAAAGCTCGCCCAATTATGGTTAGAGTTCTATCCAATGGTTTGGACTAA | 1500 | 52.6 | MDFLTLLFLLLVAFFILQQLKTRRKNLPPSPPCVPVIGHLHLLKRPIHRNFQTIAAKYGPIFTLRLGSRLALVVSSLQIAEQCFTTNDVVFANRPRLLISRYLGYNCTTISTAPYGDYWRNLRRLSAVEIFSTAKLNASLCIRKEEIRRFLLKLHSEWFAKAELKSMFSELSFNVVMRVVAGKRYYGEEVSDEAEAREFRELMEEISAQGGASHWEDFMPILKWIGRGGFENSLKKSGERADRFMQALIEERRNLKLLGTEKQRNLLDRLLELQLSEPEYYSDHTIKGIVLVLLRAGTDTSSVTLNWAMTQLLNNPEMLAKARAEIDTKIGQDRPINEGDLPNLDYLQAIISETFRLHPAAPMLLTHYSSDDCVVAGYDIPRGTTLLVNAWAIHRDPKLWDDPTSFNPERFFGPGNELNSNKIIPFGIGRRACPGASMAQRFIGLTLGLLIQCYEWKKDGEENVDMAEGGGITIHKVKPLETMCKARPIMVRVLSNGLD | 499 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 45252888 | 45257407 | - | Sed0020417.1 | Sed05g3734 | 716360 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed05g3734 | 499 | PRINTS | P450 superfamily signature | 424 | 433 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed05g3734 | 499 | PRINTS | P450 superfamily signature | 296 | 313 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed05g3734 | 499 | PRINTS | P450 superfamily signature | 349 | 360 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed05g3734 | 499 | PANTHER | CYTOCHROME P450 82C3-RELATED | 7 | 487 | IPR050651 | - | |
| Sed05g3734 | 499 | CDD | CYP81 | 59 | 480 | - | - | |
| Sed05g3734 | 499 | SUPERFAMILY | Cytochrome P450 | 28 | 487 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed05g3734 | 499 | PRINTS | E-class P450 group I signature | 79 | 100 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed05g3734 | 499 | PRINTS | E-class P450 group I signature | 171 | 189 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed05g3734 | 499 | PRINTS | E-class P450 group I signature | 433 | 456 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed05g3734 | 499 | PRINTS | E-class P450 group I signature | 55 | 74 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed05g3734 | 499 | PRINTS | E-class P450 group I signature | 423 | 433 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed05g3734 | 499 | PRINTS | E-class P450 group I signature | 285 | 302 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed05g3734 | 499 | PRINTS | E-class P450 group I signature | 348 | 366 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed05g3734 | 499 | PRINTS | E-class P450 group I signature | 389 | 413 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed05g3734 | 499 | PRINTS | E-class P450 group I signature | 305 | 331 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed05g3734 | 499 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 426 | 435 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Sed05g3734 | 499 | Pfam | Cytochrome P450 | 28 | 476 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed05g3734 | 499 | Gene3D | Cytochrome P450 | 14 | 488 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed05g3734 | 499 | FunFam | Cytochrome P450 family protein | 19 | 490 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed01g2698 | Sed-Chr1:21603718 | Sed05g3734 | Sed-Chr5:45252888 | 2.80E-132 | dispersed | |
| Sed05g3734 | Sed-Chr5:45252888 | Sed10g0675 | Sed-Chr10:4665286 | 1.40E-163 | dispersed | |
| Sed13g1698 | Sed-Chr13:22054675 | Sed05g3734 | Sed-Chr5:45252888 | 1.80E-78 | dispersed | |
| Sed05g3734 | Sed-Chr5:45252888 | Sed05g3736 | Sed-Chr5:45269952 | 9.70E-141 | proximal | |
| Sed01g0422 | Sed-Chr1:3185658 | Sed05g3734 | Sed-Chr5:45252888 | 2.20E-132 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed05g3734 | K13260 | - | csv:101210967 | 748.814 |