Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed05g3740 | ATGGATATTCTTCTCTTGGTTTCAATTTCTCTCATTCTATTTTCTCTTCTCTTTGCTTTCAACTTTGAGTTGAGACCTCGAAGATTAAACCTCCCACCAAGCCCTCTCTTTTCTCTTCCACTAATAGGCCATCTCCATCTCCTCAAACATCCACCCCATCAAACATTTCAAACCCTCTCACAAAAACTCGGCCCCGTCTTCTCCCTCCGCTTCGGTTCCCGTCTCGTCGTGATCGTATCCTCTCCATCCGCCGTTCAAGAATGCTTTACGAAGAACGATCTCATCCTCGCAAATCGGCCGTTGTTGAAAACGGGAAAGTACTTGGCATACAACCACACCACTATGGCGGTGTCACCTTACGGCGAACACTGGCGAAACCTCCGCCGAATCGGGTCTCTCGAGATCTTTTCCACGAGCCGGATTAATTTGTTCGTGGGAATTCGAGAAGACGAAGTAAAACGTTTGTTGATGAAATTATGTACCAATGATGGTGGGTTGTTGGTGGAAGAGTTTAGGGAAGTGGAATTGGAGGCTATGTTGTTGGATCTTATGTTTAATATTATTATGAGAATGGTGAGTGGAATGAAGTTTTATGAAGAGGAAAAAAATGATTCTAAGAAGTTTAGAGATATGGTGACAGAAATTATGGCACAAGGTGGAGCCACAAATGCTGGTGATTTTATACCTTTATTGAATTGGATTAATCCAAGTGGTTTTAAGAAGAGGATTATAAATCTTGGACAAAAAGGTGATGAACTTCTTCAAGGATTAGTCGATAAGATTAGGAATAAGAAAGATGGAGGGAACACTATGATTCATCATTTACTTAGCTTGCAGAAAATTGAGCCTCATTACTATAGCGACCAAATCATCAAAGGACTTGTTCAAGTTATATGTTTAGCTGGAATAGATACATCAGCGGTGACTTTAGAATGGGCACTATCCCATTTACTCAACAATCCAAAGGTGTTACAAAAAGCAAAAGTTGAGATAGATAGTTTAATCGGACAAGATCGTATGGTTAACGAATCTGACTTGTCAAGTTTGAGTTACTTGCAAGGAATAATAGCGGAGACCCTACGGCTAAGCCCGGCTGCTCCTTTGCTTGTACCGCACTGCCCATCTGAAGATTGCAAGATCGAAGGTTACGACGTTCCACGTGACACAATGGTATTGATTAACGCGTGGGCTATACATAGAGATCCAAATCTATGGGAAGATGCCACTAGTTTTAAACCTGAAAGGCATATTGGAAATGGAAACATTGGAAGTGAGGCATACAAACTAATACCATTTGGGTTGGGGAGAAGAGCTTGTCCTGGTGTGGGAATGGCTCAACGTTTTGTTGGCTTAACTTTGACATCATTGATTCAAGGCTTTGATTGGGAAAGAGTGAGCACCTCGTTGGTTGATATGACTGAAGGTAAAGGTCTCACTGTGCCCAAAGCTCAACCTTTGATAGCTAAATGTAAACCTCGTCCAATCATGAAAACAATTATGAGTGTAGCAACAGGTCGTATTTAA | 1524 | 41.54 | MDILLLVSISLILFSLLFAFNFELRPRRLNLPPSPLFSLPLIGHLHLLKHPPHQTFQTLSQKLGPVFSLRFGSRLVVIVSSPSAVQECFTKNDLILANRPLLKTGKYLAYNHTTMAVSPYGEHWRNLRRIGSLEIFSTSRINLFVGIREDEVKRLLMKLCTNDGGLLVEEFREVELEAMLLDLMFNIIMRMVSGMKFYEEEKNDSKKFRDMVTEIMAQGGATNAGDFIPLLNWINPSGFKKRIINLGQKGDELLQGLVDKIRNKKDGGNTMIHHLLSLQKIEPHYYSDQIIKGLVQVICLAGIDTSAVTLEWALSHLLNNPKVLQKAKVEIDSLIGQDRMVNESDLSSLSYLQGIIAETLRLSPAAPLLVPHCPSEDCKIEGYDVPRDTMVLINAWAIHRDPNLWEDATSFKPERHIGNGNIGSEAYKLIPFGLGRRACPGVGMAQRFVGLTLTSLIQGFDWERVSTSLVDMTEGKGLTVPKAQPLIAKCKPRPIMKTIMSVATGRI | 507 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 45291773 | 45295261 | - | Sed0023778.1 | Sed05g3740 | 716366 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed05g3740 | 507 | FunFam | Cytochrome P450 family protein | 23 | 496 | - | - | |
| Sed05g3740 | 507 | PRINTS | E-class P450 group I signature | 60 | 79 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed05g3740 | 507 | PRINTS | E-class P450 group I signature | 290 | 307 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed05g3740 | 507 | PRINTS | E-class P450 group I signature | 183 | 201 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed05g3740 | 507 | PRINTS | E-class P450 group I signature | 353 | 371 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed05g3740 | 507 | PRINTS | E-class P450 group I signature | 84 | 105 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed05g3740 | 507 | PRINTS | E-class P450 group I signature | 439 | 462 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed05g3740 | 507 | PRINTS | E-class P450 group I signature | 429 | 439 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed05g3740 | 507 | PRINTS | E-class P450 group I signature | 310 | 336 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed05g3740 | 507 | PRINTS | E-class P450 group I signature | 394 | 418 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed05g3740 | 507 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 432 | 441 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Sed05g3740 | 507 | CDD | CYP81 | 64 | 486 | - | - | |
| Sed05g3740 | 507 | PRINTS | P450 superfamily signature | 354 | 365 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed05g3740 | 507 | PRINTS | P450 superfamily signature | 301 | 318 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed05g3740 | 507 | PRINTS | P450 superfamily signature | 430 | 439 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed05g3740 | 507 | Pfam | Cytochrome P450 | 33 | 482 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed05g3740 | 507 | PANTHER | CYTOCHROME P450 82C3-RELATED | 13 | 493 | IPR050651 | - | |
| Sed05g3740 | 507 | Gene3D | Cytochrome P450 | 12 | 494 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed05g3740 | 507 | SUPERFAMILY | Cytochrome P450 | 32 | 493 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed05g3736 | Sed-Chr5:45269952 | Sed05g3740 | Sed-Chr5:45291773 | 1.00E-267 | dispersed | |
| Sed05g3737 | Sed-Chr5:45274662 | Sed05g3740 | Sed-Chr5:45291773 | 2.90E-294 | dispersed | |
| Sed05g3738 | Sed-Chr5:45280564 | Sed05g3740 | Sed-Chr5:45291773 | 4.70E-72 | dispersed | |
| Sed05g3740 | Sed-Chr5:45291773 | Sed10g0673 | Sed-Chr10:4644986 | 2.00E-165 | dispersed | |
| Sed05g3739 | Sed-Chr5:45286073 | Sed05g3740 | Sed-Chr5:45291773 | 1.70E-262 | tandem | |
| Sed05g3740 | Sed-Chr5:45291773 | Sed05g3741 | Sed-Chr5:45299043 | 4.10E-195 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed05g3740 | K13260 | - | csv:101204413 | 698.738 |