Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g3751 ATGGCACCACCGCCCGCCGCCGGATCCTTCTTCAACAAATTCATCGCTCTTTTGCTTCTAATCGTCCACCTCGGCTGCTTCCTCCTATCAACCGCCGACCACCGCCGCCGCCACCGCCCTCCGCCGGCCAAGAAGCGCTCTCTCAAGCCGCACAAAGCCCTCACCTCCTCAATTTCATTTCTCAAACGAATCTTCTCTTCCAAATCCTGCAAAACCGCGATCGACATCAATCCCCTCACCACTCCGGCCAGATCGTCGCAGCTCTCGATCGAACCGGAGATTCCTCCGCCGGAAGACACTCCGAACTCCAACACGAATCACCCCTCCGAAACGCCGCCGCAAGATTCCGGCATCACCACGGCGGAGATCGACAAATTCTTCCCCCTCCGCAACGACATCTTCCCCTGCCCTGCCTGCGGCGAGATTTTCCCCAAGGCGCAGTCGCTCGAACAGCACCAGTCGACGAAACACGCCGTGTCGGAGCTCGCCGATTCGGATTCCGGCAAGAACATCGTCCGGATCATATTCGAAACCGGATGGACGAGTAGAGAAAAAAGCCCTAAAATCCTCCGAATCTTGAAAATCCACAATAGCCAGAAGATCCTCTCCAGATTCGAGGAGTACAGAGAGTCGGTGAAGGCCAAGGCCGCCAGACACGGCGGCGCCGCCGCCGTGAAGCGGCGGGACGAGCGGTGCATCGCCGACGGGAACGAGCTTCTGAGATTTCACTGTTCGACGTTTCTGTGCGAGTTGGGGCAAAACGGTAATTCCAGCATCTGCGGGCAGCAATTTTGTAGCATTTGCGGGATAATAAAATCGGGATTCTCACACAAATTGGACGGAATTTCCACGCTGTCGAGTAGCTGGAGAGCACACGTGGCAATCCCTGAGGATATCGAAGAGGAATTCAAGTTCATGAACGTGAAGCGGGCGATTCTGGTTTGTCGGGTCGTGGCGGGTCGGGTCGCGTCCGACAACGAGGAACCGGAGAAGGACGGCGGAGGGTTTGACTCCGTCGTCGGCCGATGTGGCAGTGGGGCCCAACTGGATGAAGAAGAGCTGTTGGTTTTCAATTCGAGGGCCGTGCTCCCCTGCTTTGCGATTGTATATGAAATTTGA 1119 56.57 MAPPPAAGSFFNKFIALLLLIVHLGCFLLSTADHRRRHRPPPAKKRSLKPHKALTSSISFLKRIFSSKSCKTAIDINPLTTPARSSQLSIEPEIPPPEDTPNSNTNHPSETPPQDSGITTAEIDKFFPLRNDIFPCPACGEIFPKAQSLEQHQSTKHAVSELADSDSGKNIVRIIFETGWTSREKSPKILRILKIHNSQKILSRFEEYRESVKAKAARHGGAAAVKRRDERCIADGNELLRFHCSTFLCELGQNGNSSICGQQFCSICGIIKSGFSHKLDGISTLSSSWRAHVAIPEDIEEEFKFMNVKRAILVCRVVAGRVASDNEEPEKDGGGFDSVVGRCGSGAQLDEEELLVFNSRAVLPCFAIVYEI 372
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 45372689 45374415 + Sed0026727.1 Sed05g3751 716377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g3751 372 Gene3D - 158 371 - -
Sed05g3751 372 MobiDBLite consensus disorder prediction 81 118 - -
Sed05g3751 372 SUPERFAMILY ADP-ribosylation 160 371 - -
Sed05g3751 372 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 58 370 - -
Sed05g3751 372 MobiDBLite consensus disorder prediction 103 118 - -
Sed05g3751 372 ProSitePatterns Zinc finger C2H2 type domain signature. 136 157 IPR013087 -
Sed05g3751 372 ProSiteProfiles Zinc finger C2H2 type domain profile. 134 162 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g3751 Sed-Chr5:45372689 Sed13g1577 Sed-Chr13:20939216 3.90E-54 dispersed
Sed05g3751 Sed-Chr5:45372689 Sed03g0822 Sed-Chr3:4918291 1.60E-55 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38755 None None None None Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g3751 - - - 0.0