Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g3753 ATGAAGCGCGGCCGGGGCAAAGAAGAAAGACATGAAGAAGAAGGCACACAAGGTCCAAAGAAGAAAGCTAGAGCTACGGCAGAGAAGAAAGTCATTAGCAATGGGAACACGTTTAATGATGGATTTCCTAAGTTACATAATTCACCTTGTGCCAAACCAGATTGGAATCCTAAAGATACTGAACATATAAAAACAGCTAAAGAAGTGTTGCACGTATCAACAGCCCCAACTACAATCATGTGCCGTGAGGACGAGCAAAGTAGAATCGTCAATTTTTGCAAGTCTTGCGTGGAGCAAGAAATAGCTGGTAGTCTGTATGTTTGTGGGTGTCCAGGAACTGGCAAATCTTTGTCCATGGAGAAAGTGAAAGAAGAGTTGGCTGCGTGGGCAAACGAGTCAGGTCTTCAGCTGCCAGACATTTTGTCGATAAACTGCACTTCGTTAGCTAATACGTCCGATATTTTCATTAAGATGATGGGTGAAGCCCAGCCACAAAAGAAAAGGAAGGGCTCTTTAACACCCTTGCAACATCTTCAACGCCTATACTCCCAAAAGGCAGAGTCGTCTTGCGTGAAGATGATGTTGATAATAGCCGATGAATTGGATTATTTAATTACAAAGGATAAAGTGGTGCTTCATGAACTGTTCATGCTCACAACTTTCCCATTTTCAAGATGTATATTGATAGGAATTGCTAATGCTATTGATTTAGCAGATCGCTTTCTTCCAAGACTTCAAGCATTGAATTGCAAACCTCAGGTTGTAACTTATAGGGCTTATTCCAAGGATCAGATCCTCAAGATTCTTGAACAAAGGTTAATTGCGCTTCCTTTCGTTGTCTTTCAACCACAAGCATTGGAGCTATGTGCCAGAAAAGTTGCAGCTGTGTCCGGAGATATGAGAAAAGCTCTTTGCATTTGCAGAAATGCCATTGAGTTATTAGAGGTGGAACTCAAAGAATCCTCCAAGGAGCTGAACCATAATGATGGGTGTCAGGCTTCAGCACCCGGGTTTGCTATAAGACAAGAGCCTCAGATTGTGAGGTTGGACCATATGGCTATTGCCTTATCCAAGACTTTTAAATCACCAGCAGTAGAAACCATACAATCTCTTCCTCAGCATCAACAGATTATTTTATGCTCCGTCGTGAAACTCGTTCGTGGAGGGAAGAAGGATACAACCATAGGAGAGCTAAACAAATCATACATAGATATCTGCAAATCAACACTAATCCCACCGGTGGGAACTTTCGAACTTTCAAATATGTTCACAGTGCTTAACGACCAGGGGCTTCTCAAACTTGGCCAGTCTCGAGACGATAGAACGAGGCGAGTATTGTTGAAAGTTGATGAAGCCGATGTCATGTTTGCATTACAGGGAATACGCTTCTTTCGAAACTGCCTACAGTAA 1410 42.41 MKRGRGKEERHEEEGTQGPKKKARATAEKKVISNGNTFNDGFPKLHNSPCAKPDWNPKDTEHIKTAKEVLHVSTAPTTIMCREDEQSRIVNFCKSCVEQEIAGSLYVCGCPGTGKSLSMEKVKEELAAWANESGLQLPDILSINCTSLANTSDIFIKMMGEAQPQKKRKGSLTPLQHLQRLYSQKAESSCVKMMLIIADELDYLITKDKVVLHELFMLTTFPFSRCILIGIANAIDLADRFLPRLQALNCKPQVVTYRAYSKDQILKILEQRLIALPFVVFQPQALELCARKVAAVSGDMRKALCICRNAIELLEVELKESSKELNHNDGCQASAPGFAIRQEPQIVRLDHMAIALSKTFKSPAVETIQSLPQHQQIILCSVVKLVRGGKKDTTIGELNKSYIDICKSTLIPPVGTFELSNMFTVLNDQGLLKLGQSRDDRTRRVLLKVDEADVMFALQGIRFFRNCLQ 469
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 45376890 45383340 + Sed0018588.2 Sed05g3753 716379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g3753 469 CDD Cdc6_C 372 454 IPR015163 -
Sed05g3753 469 Pfam AAA domain 102 221 IPR049945 GO:0016887(InterPro)
Sed05g3753 469 SMART Cdc6_C_2 379 458 IPR015163 -
Sed05g3753 469 MobiDBLite consensus disorder prediction 1 38 - -
Sed05g3753 469 PANTHER CELL DIVISION CONTROL PROTEIN 6-RELATED 19 464 IPR050311 GO:0003688(PANTHER)|GO:0005634(PANTHER)|GO:0033314(PANTHER)
Sed05g3753 469 SUPERFAMILY Winged helix DNA-binding domain 365 467 IPR036390 -
Sed05g3753 469 PIRSF Cdc6 1 469 IPR016314 GO:0006270(InterPro)|GO:0051301(InterPro)
Sed05g3753 469 Pfam Cdc6/ORC-like, ATPase lid domain 260 317 IPR054425 -
Sed05g3753 469 FunFam Cell division control protein 249 368 - -
Sed05g3753 469 Gene3D - 364 460 IPR036388 -
Sed05g3753 469 SMART AAA_5 101 251 IPR003593 GO:0016887(InterPro)
Sed05g3753 469 FunFam Cell division control protein 60 248 - -
Sed05g3753 469 Gene3D - 253 335 - -
Sed05g3753 469 Pfam CDC6, C terminal winged helix domain 366 457 IPR015163 -
Sed05g3753 469 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 67 317 IPR027417 -
Sed05g3753 469 CDD AAA 85 249 - -
Sed05g3753 469 Gene3D - 59 252 IPR027417 -
Sed05g3753 469 MobiDBLite consensus disorder prediction 1 28 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g3753 Sed-Chr5:45376890 Sed06g1845 Sed-Chr6:42847557 1.20E-31 dispersed
Sed05g3752 Sed-Chr5:45376890 Sed05g3753 Sed-Chr5:45376890 2.20E-267 tandem
Sed05g3753 Sed-Chr5:45376890 Sed05g3754 Sed-Chr5:45376890 2.20E-267 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g3753 K02213 - csv:101205741 729.554