Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g3774 ATGATGTGCAATGGTTGCAATAGGAAATCTGCAAGCACTAACTTTATGATGGATGGTTGCAATAGAAATTTGGGGTTTGTTTTTTCGGATATGCTCGAATTTTCGGCTTCGGATGATCTGATTGGATTTAAGAGGGCTGTTGAGGAAGATGGTCATGATATTGATGAAGCAAGTTTGTGGTATGGGAGGATTTTTGGTTCAAAAAAGATGGGATATGAAGAAAGGACCCCTCTTATGGTTGCAGCCATGTTTGGGAGCTTGAATGTTCTTTCTTATATTGTTCACAGTGGTTGTGTCGATGTGAATCGGGCTTGCGGTTCGGATGGCGCAACAGCCCTCCATTGTGCTGTTGCTGGTGGTTCTGCTGTTTCGGATCAGGTTGTTGAACTGTTGCTTAGCGCTTCAGCAGTTGCGAATTCTGTTGATGCTAGCGGTAAACGGCCCGGTGACTTGATTGCTTCTGATTTTACTTTAGCCTCTTCCTATTCGAGGAAGAAGGCATTACAACAATTGCTAAATGGCCATTGTAAGGATGAAGTCCTCGGTTCGTCTGAAGCCATATTTTACGAGAGAGAAACACATGAACCCGTGGAGCTTTCAACTCCTCGGGTTTCAAAAGATGGAATGGAGAAGAAAGAGTATCCAGTTGATCTCTCACTTCCAGACATCAAGAATGAAATCTATACCACAGATGAGTTTAGAATGTATACTTTTAAGATCAAACCTTGTACAAGAGCTTACTCCCATGATTGGACAGAGTGTCCATTTGTTCACCCTGGGGAGAATGCAAGGAGGCGGGATCTGAGGAAATACCATTACAGCTGCGTCCCGTGTCCCGAATTTCGAAAGGGTATATGTAGGCAGGGGGATGCCTGCGAATATGCTCATGGAATTTTTGAATGTTGGCTCCATCCTGCTCAGTACCGGACCCGTCTTTGCAAGGATGAAACTGGATGCACAAGAAAAGTCTGTTTCTTTGCTCACAAACCAGAGGAGCTTCGCCCGTTGTATGCTTCAACCGGATCTGCTGTATTGTCCCCAAGATCAATCTTTGGTTCTTTACCCGACATGCCATCAATCAGTCCGCTTTCCCTTGGTTCTCCTTCAGCTCTGATACCACCTTCATCAACTCCGCCTCTGTCTCCTGGAGTTTCTTCTTCGATGGGTGGAACCATGTGGCAAACTCAATGTAAAAATGCACCTCCCACCTTGCAGTTTCCGGGTAGCAGGTTGAAGGCTTCTTTGAGCGCGAGAGACATGGATTTCGATGCTGAGCTACTCGGTCTCGAAAGCCAGCGTCGTAGACAGCAGCAGTTAATGGATGAGTTATCCTGTCTGCCTTCCCCTTCCAGATGGAACAATGGCTTATCAACTCCTGCATCCTTTTCATCTCCAAGAAGTAGAAATGGAGAATTGAATGGGCTTGGAGGCATGAAACCAACTAACCTCGAGGACATTTTCGGGTCTGTTGATCCTGCAATTCTGTCTCAATTACAAGGACTTTCGCTAGATTCTGTGGGATCTCGAGTACAATCTCCTTCCGGGATTCAGATGCACCAAAGCCTGAATCAGTCTTCATTCTCGAGCTATGCTAACAGCATTGGATCTCCTCCTGCAAGGTCGTCCCAACCATTTAGCATCGGTTCGTCTGTGTCTGCTGCTGCAGCAAGTGGTCTGAGTTCTAGGGCTGCTGCTTTTGTCAAGCGGAGCCAAAGCTTTATCGAACGCAGTGTGGTGAATCGTCATTCTGGTTTTTCACCCCCAGCTACAGCTGCACCTGTCATGCCAATAAACTTCCCTGATTGGGGTTCACCAGATGGGAAACTAGACTGGGGAATGCATGGAGAAGAACTCAACAAGTTAAGAAAGTCAGCATCATTCGGGATTCGCAGTAGTTTTCTAGCAACATCCACAATGCATGCAGCCGCTGCCGAGCCAGACGTTTCTTGGGTTCAGTCCCTTGTAAAGGATGCTCCAACCGAGAACTCGGTGCAGTTGAGTCCGGACGAGCTGCAGCAACAGCAGCTTTGTCATCGCGATAATGGCGATTTGAAGCAGATGTACATGGAACAGGAGCAGTTGGTTGCTTAA 2091 46.77 MMCNGCNRKSASTNFMMDGCNRNLGFVFSDMLEFSASDDLIGFKRAVEEDGHDIDEASLWYGRIFGSKKMGYEERTPLMVAAMFGSLNVLSYIVHSGCVDVNRACGSDGATALHCAVAGGSAVSDQVVELLLSASAVANSVDASGKRPGDLIASDFTLASSYSRKKALQQLLNGHCKDEVLGSSEAIFYERETHEPVELSTPRVSKDGMEKKEYPVDLSLPDIKNEIYTTDEFRMYTFKIKPCTRAYSHDWTECPFVHPGENARRRDLRKYHYSCVPCPEFRKGICRQGDACEYAHGIFECWLHPAQYRTRLCKDETGCTRKVCFFAHKPEELRPLYASTGSAVLSPRSIFGSLPDMPSISPLSLGSPSALIPPSSTPPLSPGVSSSMGGTMWQTQCKNAPPTLQFPGSRLKASLSARDMDFDAELLGLESQRRRQQQLMDELSCLPSPSRWNNGLSTPASFSSPRSRNGELNGLGGMKPTNLEDIFGSVDPAILSQLQGLSLDSVGSRVQSPSGIQMHQSLNQSSFSSYANSIGSPPARSSQPFSIGSSVSAAAASGLSSRAAAFVKRSQSFIERSVVNRHSGFSPPATAAPVMPINFPDWGSPDGKLDWGMHGEELNKLRKSASFGIRSSFLATSTMHAAAAEPDVSWVQSLVKDAPTENSVQLSPDELQQQQLCHRDNGDLKQMYMEQEQLVA 696
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 45496311 45499409 + Sed0027078.1 Sed05g3774 716400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g3774 696 SMART ANK_2a 108 140 IPR002110 GO:0005515(InterPro)
Sed05g3774 696 SMART ANK_2a 73 103 IPR002110 GO:0005515(InterPro)
Sed05g3774 696 SMART c3hfinal6 272 298 IPR000571 GO:0046872(InterPro)
Sed05g3774 696 SMART c3hfinal6 307 330 IPR000571 GO:0046872(InterPro)
Sed05g3774 696 Pfam Ankyrin repeats (3 copies) 73 138 IPR002110 GO:0005515(InterPro)
Sed05g3774 696 PANTHER UNKEMPT FAMILY MEMBER 69 658 IPR045234 -
Sed05g3774 696 Gene3D - 272 335 - -
Sed05g3774 696 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 276 297 IPR000571 GO:0046872(InterPro)
Sed05g3774 696 MobiDBLite consensus disorder prediction 372 391 - -
Sed05g3774 696 ProSiteProfiles Zinc finger C3H1-type profile. 277 299 IPR000571 GO:0046872(InterPro)
Sed05g3774 696 Gene3D - 34 175 IPR036770 -
Sed05g3774 696 FunFam Zinc finger CCCH domain-containing protein 66 230 298 - -
Sed05g3774 696 ProSiteProfiles Ankyrin repeat region circular profile. 108 142 - -
Sed05g3774 696 ProSiteProfiles Ankyrin repeat profile. 108 143 IPR002110 GO:0005515(InterPro)
Sed05g3774 696 SUPERFAMILY Ankyrin repeat 70 172 IPR036770 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g2907 Sed-Chr4:40752391 Sed05g3774 Sed-Chr5:45496311 1.90E-200 dispersed
Sed05g3774 Sed-Chr5:45496311 Sed12g1226 Sed-Chr12:8602749 2.50E-126 dispersed
Sed01g0827 Sed-Chr1:6085266 Sed05g3774 Sed-Chr5:45496311 1.6e-311 wgd
Sed05g3774 Sed-Chr5:45496311 Sed07g2572 Sed-Chr7:41300520 4.90E-199 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38756 PF12796 Ank_2 1.70E-06 CL0465 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g3774 - - - 0.0