Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g3791 ATGAGAAGTGGTTGGTCATGGCCATGTGCGTCGTGCAAATTGCTGCGGCGGCGGTGCACAGAGACGTGCGTTTTGGCTCCTTATTTTCCTCCCCATGACCCTTACAAGTTCGCCGTTGTTCACAAGTTCTTTGGCTCTAGCAATATCACCAAAATGTTACAGGCGCTTCCCGAAGATCAAAGAGCGGATGCAGCAAACAGTATGGTATATGAAGCGAATGCGAGAATGCAAGATCCAGTGTATGGTTGCGTCGGTATAATCTCGTTCCTACGCAACCATATTTTCCGATTAGAAATGCAGTTGGCAGCAGCACAAGCAGAGATGTTAAGCTTTCAAAGGCAGCAACAAGCAACTGAAGTAACATTTCCAGTGGCACAAATGGACCAAGATTATCAAGATCTTGTTTCTTTCTCAAATGACAATTCTAAGTCCATCAGTAGTTTCCAAGAAGTGGAAGATTGTTACTTTCAATGGACTTAA 480 44.38 MRSGWSWPCASCKLLRRRCTETCVLAPYFPPHDPYKFAVVHKFFGSSNITKMLQALPEDQRADAANSMVYEANARMQDPVYGCVGIISFLRNHIFRLEMQLAAAQAEMLSFQRQQQATEVTFPVAQMDQDYQDLVSFSNDNSKSISSFQEVEDCYFQWT 159
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 45612942 45614528 - Sed0014994.1 Sed05g3791 716417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g3791 159 Pfam Lateral organ boundaries (LOB) domain 8 105 IPR004883 -
Sed05g3791 159 Coils Coil 87 114 - -
Sed05g3791 159 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 8 132 - -
Sed05g3791 159 ProSiteProfiles LOB domain profile. 7 108 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g3791 Sed-Chr5:45612942 Sed11g2121 Sed-Chr11:35104592 5.60E-34 dispersed
Sed01g0513 Sed-Chr1:3904881 Sed05g3791 Sed-Chr5:45612942 8.40E-15 transposed
Sed01g0080 Sed-Chr1:743315 Sed05g3791 Sed-Chr5:45612942 1.30E-29 wgd
Sed05g3791 Sed-Chr5:45612942 Sed07g2592 Sed-Chr7:41488810 5.80E-39 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38759 PF03195 LOB 5.80E-39 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g3791 - - - 0.0