Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g3793 ATGGCTACCGAGGCCACTGAAGCGACGACGAAGTTCCAGAATCCGGATTTTCTTCCGGTTCGGTCGCCACCGGATTTTCATCCCGAGATTGTGGTTTCAGCCCACGATGGTCTCCGGTTCTGGCAGTTCATGATTGCCGGTTCCATCGCGGGGTCTGTTGAACACATGGCTATGTTTCCGGTCGATACCGTGAAGACGCATATGCAAGCGCTTGGTTCTTGTCCAATTAAATCCGTTGGGGTTCGACAAGCCCTTCGGTCGATTTTGAAATCGGAGGGTCCTGCTGGTTTTTATCGTGGAATTGGTGCTATGGGTCTTGGCGCTGGACCTGCACATGCTGTGTATTTTACAGTTTACGAGAATTGTAAGAAGCTTTTCTCTGGTGGGGATCCTAATAATTCAGTTGCACACGCCGCTTCGGGCGTCTGCGCGACGGTGATGAGTGATGCTGTTCTTACACCGATGGACATGGTTAAACAGAGGCTGCAACTGAGTAATAGCCCTTACAAGGGAGTTTTGGATTGTGTCAAAAGGGTATATAGAGATGAGGGTTTGAAAGCATTTTACTCATCGTATAGAACTACAGTTTTGATGAATGCTCCGTTTACTGCTGTACATTTTGCCACTTATGAAGCTTCAAAGAGATGTTTGATGGAGTTTTCTCCGGAGAGTGTAAATGATGAACAGTGGACTGTTCATGCGACGGCCGGAGCTGCTGCAGGAGCCTCGGCTGCACTCGTTACAACGCCACTTGATGTGGTTAAGACTCAATTACAATGTCAGGGTGTATGTGGATGCGATAGATTCAAAAGTGGGTCGATCGGGGACGTCATTCGAACAATACTCAAGAAGGATGGATACAGAGGGCTTATGAGAGGATGGGTTCCAAGGATGCTCTTCCATGCTCCCGCGGCAGCTATTTGCTGGTCGACATATGAAGCGTTAAAATCCTTCTTCCAAGACCTTAACGACAGCAGTGAAAACGTAACCTAA 993 48.14 MATEATEATTKFQNPDFLPVRSPPDFHPEIVVSAHDGLRFWQFMIAGSIAGSVEHMAMFPVDTVKTHMQALGSCPIKSVGVRQALRSILKSEGPAGFYRGIGAMGLGAGPAHAVYFTVYENCKKLFSGGDPNNSVAHAASGVCATVMSDAVLTPMDMVKQRLQLSNSPYKGVLDCVKRVYRDEGLKAFYSSYRTTVLMNAPFTAVHFATYEASKRCLMEFSPESVNDEQWTVHATAGAAAGASAALVTTPLDVVKTQLQCQGVCGCDRFKSGSIGDVIRTILKKDGYRGLMRGWVPRMLFHAPAAAICWSTYEALKSFFQDLNDSSENVT 330
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 45621321 45625108 + Sed0008323.1 Sed05g3793 716419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g3793 330 FunFam Mitochondrial RNA-splicing protein MRS3 167 330 - -
Sed05g3793 330 Gene3D Mitochondrial carrier domain 26 166 IPR023395 -
Sed05g3793 330 SUPERFAMILY Mitochondrial carrier 36 314 IPR023395 -
Sed05g3793 330 PRINTS Mitochondrial carrier protein signature 189 207 IPR002067 GO:0055085(InterPro)
Sed05g3793 330 PRINTS Mitochondrial carrier protein signature 237 259 IPR002067 GO:0055085(InterPro)
Sed05g3793 330 PRINTS Mitochondrial carrier protein signature 43 56 IPR002067 GO:0055085(InterPro)
Sed05g3793 330 PRINTS Mitochondrial carrier protein signature 147 165 IPR002067 GO:0055085(InterPro)
Sed05g3793 330 PRINTS Mitochondrial carrier protein signature 56 70 IPR002067 GO:0055085(InterPro)
Sed05g3793 330 ProSiteProfiles Solute carrier (Solcar) repeat profile. 132 216 IPR018108 -
Sed05g3793 330 ProSiteProfiles Solute carrier (Solcar) repeat profile. 38 125 IPR018108 -
Sed05g3793 330 Gene3D Mitochondrial carrier domain 167 330 IPR023395 -
Sed05g3793 330 PANTHER MITOFERRIN-1-RELATED 33 321 - GO:0015093(PANTHER)|GO:0031966(PANTHER)|GO:0048250(PANTHER)
Sed05g3793 330 ProSiteProfiles Solute carrier (Solcar) repeat profile. 228 318 IPR018108 -
Sed05g3793 330 Pfam Mitochondrial carrier protein 228 321 IPR018108 -
Sed05g3793 330 Pfam Mitochondrial carrier protein 38 127 IPR018108 -
Sed05g3793 330 Pfam Mitochondrial carrier protein 132 219 IPR018108 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g2513 Sed-Chr3:35035691 Sed05g3793 Sed-Chr5:45621321 1.10E-109 dispersed
Sed05g3793 Sed-Chr5:45621321 Sed05g3823 Sed-Chr5:45812827 1.10E-28 dispersed
Sed05g3793 Sed-Chr5:45621321 Sed01g0064 Sed-Chr1:652971 1.30E-29 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g3793 K15113 - csv:101215924 609.372