Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g3801 ATGTCAGGCCTTCGCTCTCTCTTGGTTTTTGTTGTTCTTTGTGTTTTATTAGGTGCTCTAAGCCATAGCCATGCTGAGTTAACTCCAAACTTTTACAAGGAAATCTGCCCTAAAGCCTTGCCGACGATAAAAAATGTTGTCTTGAAGGCCATCAAACGCGAGGCTCGAATGGGAGCTTCGCTCTTACGTCTCCATTTCCACGACTGTTTTGTTAACGGTTGTGATGGGTCGGTTTTGTTGGATGATACCGCTACCTTTACCGGAGAAAAGACCGCCGCACCTAATCTAAACTCGATTAGAGGACTCGAAGTTGTTGATGAGATTAAGACACAAGTTAACAAAGCTTGCAAAGGCAACGTTGTGTCTTGTGCTGACATCTTAGCCGTTGCTGCTCGGGACTCTATTGCTATTCTTGGTGGGCCAAACTACAAAGTACTGTTAGGAAGAAGAGACGCAAGAACAGCAAGCAAAAACGATGCCAACACAAATCTTCCCGCACCATTTTTCAGCTTCTCACAGCTTATATCCAACTTCCAATCTCATGGCCTCGACCTCAAGGACCTCGTCCTCTTATCGGCCGGACATACCATCGGCTTTGGCCAATGCAGATTTTTCCGAAGCAGGATATACAACGACACGAACATCGACCCAAAATTCGCAGCCATGCTGCAGGCGAACTGCCCGCCAGTCGGCAACGATAACAATCTGCAGGGCATTGACAATACTCCACATTTCTTTGACACTGCCTACTTCAAGGACTTGTTGAAGAAGAAGGGTCTTTTCCATTCCGACCAGGAACTCTTCGGCGGCGGCAACGAGGACAGTGATGATTTGGTGTCGTTCTATAGCCGCTATCCCAATGATTTTAGAAATGACTTTGCTTCTTCCATGATCAAAATGGGAAATCTGATGCCACTCACTGGAAGTGATGGTGAAATTAGAGCTAATTGCAGGGTTGTTAATTACTAA 969 45.82 MSGLRSLLVFVVLCVLLGALSHSHAELTPNFYKEICPKALPTIKNVVLKAIKREARMGASLLRLHFHDCFVNGCDGSVLLDDTATFTGEKTAAPNLNSIRGLEVVDEIKTQVNKACKGNVVSCADILAVAARDSIAILGGPNYKVLLGRRDARTASKNDANTNLPAPFFSFSQLISNFQSHGLDLKDLVLLSAGHTIGFGQCRFFRSRIYNDTNIDPKFAAMLQANCPPVGNDNNLQGIDNTPHFFDTAYFKDLLKKKGLFHSDQELFGGGNEDSDDLVSFYSRYPNDFRNDFASSMIKMGNLMPLTGSDGEIRANCRVVNY 322
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 45692405 45694585 - Sed0021556.2 Sed05g3801 716427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g3801 322 FunFam Peroxidase 30 170 - -
Sed05g3801 322 PANTHER PEROXIDASE 72-RELATED 10 320 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g3801 322 FunFam Peroxidase 165 300 - -
Sed05g3801 322 Gene3D Peroxidase, domain 2 165 300 - -
Sed05g3801 322 ProSiteProfiles Plant heme peroxidase family profile. 26 321 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g3801 322 ProSitePatterns Peroxidases active site signature. 58 69 IPR019794 GO:0004601(InterPro)
Sed05g3801 322 PRINTS Haem peroxidase superfamily signature 139 151 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g3801 322 PRINTS Haem peroxidase superfamily signature 121 138 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g3801 322 PRINTS Haem peroxidase superfamily signature 187 202 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g3801 322 PRINTS Haem peroxidase superfamily signature 239 254 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g3801 322 PRINTS Haem peroxidase superfamily signature 58 72 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g3801 322 Pfam Peroxidase 44 269 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g3801 322 ProSitePatterns Peroxidases proximal heme-ligand signature. 187 197 IPR019793 -
Sed05g3801 322 Gene3D - 30 318 - -
Sed05g3801 322 PRINTS Plant peroxidase signature 36 55 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g3801 322 PRINTS Plant peroxidase signature 60 80 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g3801 322 PRINTS Plant peroxidase signature 237 252 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g3801 322 PRINTS Plant peroxidase signature 139 154 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g3801 322 PRINTS Plant peroxidase signature 120 130 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g3801 322 PRINTS Plant peroxidase signature 253 270 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g3801 322 PRINTS Plant peroxidase signature 100 113 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g3801 322 PRINTS Plant peroxidase signature 186 198 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g3801 322 PRINTS Plant peroxidase signature 295 308 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g3801 322 SUPERFAMILY Heme-dependent peroxidases 27 321 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g3801 322 CDD secretory_peroxidase 26 320 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0808 Sed-Chr1:5977211 Sed05g3801 Sed-Chr5:45692405 3.00E-143 dispersed
Sed05g1909 Sed-Chr5:32465460 Sed05g3801 Sed-Chr5:45692405 3.10E-87 dispersed
Sed05g1910 Sed-Chr5:32470424 Sed05g3801 Sed-Chr5:45692405 6.60E-95 dispersed
Sed05g3801 Sed-Chr5:45692405 Sed05g3805 Sed-Chr5:45703213 4.10E-92 dispersed
Sed05g3801 Sed-Chr5:45692405 Sed05g3802 Sed-Chr5:45692579 5.30E-156 tandem
Sed01g0806 Sed-Chr1:5960997 Sed05g3801 Sed-Chr5:45692405 4.30E-86 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g3801 K00430 - csv:101204979 507.294