Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g3805 ATGGAGATTACAACTTCTCTTACCAAAATGGTCATGGCTTTAGCAATAACCATATTGGCAGTGATCATTGGGAGCTCCTCAGCTGATGAGCTCTCTCCCGATTTCTACGACTATACCTGCCCGAAGCTCCTCAACACCGTTCGAGCCGGTATTCAATCCGCTGTCGCTAAGGAATCTCGCATGGGCGCTTCCCTTCTTCGTCTCCACTTTCATGACTGCTTTGTTAACGGTTGCGATGGATCAATTCTTTTGGAAGATACTCCTACGTTTATCGGAGAGCAAACGGCACCTCCTAATATCAATTCTATTAGAGGGTTTAACGTGATCGAAAGTATAAAGAAACATGTTGAAAGAATTTGTCCTCATGTTGTCTCTTGTGCTGATATTTTGACTCTCACGGCTCGTGATTCGGTTGTCGCACTCGGAGGGCCAAGTTGGGAGGTGAAATTGGGAAGAAGAGATTCCCTATCAGCTAGCTTTTCTGATGTCGGCGACTCGATTCCTTCACCGGCCTTCTCACTCGATAACCTCATCGACCAGTTCGATTCTAAAGGCCTTTCCCTTCGAGACTTGGTTGCCTTATCTGGGGCCCACACAATTGGACAAGCCAAGTGTTTGTTTTTCAAGAACCGTATATACAACGAGACCAACATCGACATGTCGTTCGCGGAGGAGAGAAAAGAAAACTGCCCAGTAAACGGAGGAGACGACAATCGTTCTCCTCTGGATTTGAAAACCCAGAATCTTTTCGACAACTACTACTTCAAGAACCTTCTGGACCAAAAGGGTTTGCTCCACTCCGATCAAGTGCTTCACGACGGCGGATCCGCCGATTCCTTGGTTGAGCTCTACGCCGGCAACGGCGACGCCTTTGAATCCGACTTTGCGGCGGCGATGATCAAGATGGCCGATATTGACCCGCTTACCGGATCCGACGGCGAGATCCGAAAGCACTGCAGCCGACCCAACCATTAA 975 48.51 MEITTSLTKMVMALAITILAVIIGSSSADELSPDFYDYTCPKLLNTVRAGIQSAVAKESRMGASLLRLHFHDCFVNGCDGSILLEDTPTFIGEQTAPPNINSIRGFNVIESIKKHVERICPHVVSCADILTLTARDSVVALGGPSWEVKLGRRDSLSASFSDVGDSIPSPAFSLDNLIDQFDSKGLSLRDLVALSGAHTIGQAKCLFFKNRIYNETNIDMSFAEERKENCPVNGGDDNRSPLDLKTQNLFDNYYFKNLLDQKGLLHSDQVLHDGGSADSLVELYAGNGDAFESDFAAAMIKMADIDPLTGSDGEIRKHCSRPNH 324
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 45703213 45705194 + Sed0006221.1 Sed05g3805 716431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g3805 324 FunFam Peroxidase 168 302 - -
Sed05g3805 324 CDD secretory_peroxidase 30 321 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Sed05g3805 324 ProSiteProfiles Plant heme peroxidase family profile. 30 323 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g3805 324 Pfam Peroxidase 47 287 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g3805 324 Gene3D Peroxidase, domain 2 168 302 - -
Sed05g3805 324 ProSitePatterns Peroxidases proximal heme-ligand signature. 190 200 IPR019793 -
Sed05g3805 324 PRINTS Plant peroxidase signature 40 59 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g3805 324 PRINTS Plant peroxidase signature 189 201 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g3805 324 PRINTS Plant peroxidase signature 257 274 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g3805 324 PRINTS Plant peroxidase signature 64 84 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g3805 324 PRINTS Plant peroxidase signature 123 133 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g3805 324 PRINTS Plant peroxidase signature 142 157 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g3805 324 PRINTS Plant peroxidase signature 241 256 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g3805 324 PRINTS Plant peroxidase signature 104 117 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g3805 324 PRINTS Plant peroxidase signature 297 310 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g3805 324 Gene3D - 34 320 - -
Sed05g3805 324 PANTHER PEROXIDASE 72-RELATED 16 321 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g3805 324 SUPERFAMILY Heme-dependent peroxidases 30 323 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g3805 324 PRINTS Haem peroxidase superfamily signature 243 258 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g3805 324 PRINTS Haem peroxidase superfamily signature 142 154 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g3805 324 PRINTS Haem peroxidase superfamily signature 62 76 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g3805 324 PRINTS Haem peroxidase superfamily signature 190 205 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g3805 324 PRINTS Haem peroxidase superfamily signature 124 141 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g3805 324 ProSitePatterns Peroxidases active site signature. 62 73 IPR019794 GO:0004601(InterPro)
Sed05g3805 324 FunFam Peroxidase 34 175 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g1504 Sed-Chr4:29922708 Sed05g3805 Sed-Chr5:45703213 5.50E-97 dispersed
Sed05g3801 Sed-Chr5:45692405 Sed05g3805 Sed-Chr5:45703213 4.10E-92 dispersed
Sed05g3802 Sed-Chr5:45692579 Sed05g3805 Sed-Chr5:45703213 3.20E-82 dispersed
Sed05g3805 Sed-Chr5:45703213 Sed06g1480 Sed-Chr6:39529727 5.10E-98 dispersed
Sed05g3805 Sed-Chr5:45703213 Sed05g3806 Sed-Chr5:45708736 1.50E-134 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g3805 K00430 - csv:101204245 483.796