Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed05g3806 | ATGGCGATTAAAACTTCAATTTCTAACAAAATGTCCATGGCTTTAGCATTAGCCCTATTGGCAATGTTCATTGGGAGCTCCTCAGCTCAGCTCTCTCCCAATTTCTACTACAAGACCTGCCCCAAGCTCCTTCGCATCGTTCAAGCCGGTGTCCGGTCTGCCGTTACCAAGGAAGCCCGCATGGGCGCTTCCCTTCTCCGCCTTCACTTTCACGACTGCTTTGTTAACGGTTGCGACGGATCGATTCTTCTAGAAGATACTCCTACATTTACAGGAGAGCAGACTGCAGCTCCTAATAATAGATCCGTTAGAGGGTTCGACGTGATTGAAAGTATAAAGAAAAATGTTGAAAAAGTTTGTCCCGGTGTTGTCTCTTGCGCTGATATCGTGACTCTTTCTGCTCGTGACTCCGTTGTTGCGCTTGGAGGGCCAAGTTGGAAAGTGAAATTGGGAAGAAGAGATTCTAAAACTGCCAGTTTCTCTGATGTCACTGGCGCCATTCCTCCGCCAACGTCTACACTCCAAACCCTCATCAATCGATTCAACACCAAAGGCCTTTCTCCTCGAGATTTGGTTGCTTTATCTGGGGCTCACACAATTGGACAAGCAAGGTGTTTATTTTTCAAGGACCGTATATACAACGAGAGCAACATCGACGAGTCGTTCGCGGAAGAGAGGCAAAGGAATTGCCCGAGAAATGGAGGAGACGACAATCGTGCTCCTCTAGACTTTAGAACCCCAAAGCTTTTCGACAACTACTACTACAAGAACCTTTTGGAGAAGAAAGCTCTTCTTCGCTCCGATCAAGTGTTGCACGATGGTGGATCCACCGATTCCTTGGTCGAGCTCTACGGCGACGACACCGATGCCTTCGAGTCGGACTTTGTGGCCGCGATGATCAAGATGGGAGACATTGAGCCGCTCACTGGCTCGCAAGGCGAAATTCGAAAGCTTTGTACTTGCCACCAAACAACCGAACCATCTCAGTCCACTTCCGTGGTTGATCCTATTCTACCCCCATCCTCTACAGAACTTACCACCCATAATTTACCTCCTTCCTCTATTCCAACCTTAGTTGCTCCACCTCTTGTGCAAAATAGACATAGTATGCAAACAAGAGGAAAATCAGGCATATCCAAAAAACGGGTCTTTTTAGCCAATGTGACTTCCTCTCCACATGAACCAACTTCCTTCACTCAAGCAAATAAATCCACCAATTGGAGAGATGCAATGATTGATGAGTTTGAAGCCCTTAAAAACCAAAAAACCTGGGATCTTACTCCTCTTCCTCCTTACAAACACCTTATAGGGTGGCCTAATCAAACGACAATCATGTCCACCACACTCCTCTTCCTTAACCTGAAAAATCTCCATTGTTTTCCAAAGCAAATGGCGATTACTACAAAGAGTTTGGTGGTTTTGGTCTTAGCTTTCCTTTTCATGGGAAACTCTTCAGCCCAACTCTCCACGTCCTTCTACTACAAGACCTGCCCCAAGCTCCTCTCGACCGTCCGGTCGGGTGTCCTATCTGCCATTTCTAAGGAAACTCGTATCGGTGCTTCCCTCCTCCGTCTTCACTTTCACGACTGCTTTGTTAATGGATGTGATGGATCGATCCTTTTGGCCGACACTCCAAGCTTCAGAGGAGAGCAAACAGCACCTCCAAACATTAGATCTGTTAGAGGCTTCAATGTCATAGAAGCTATCAAGAGTAGCGTAGAAAAACTTTGTCCAGGCGTTGTCTCTTGTGCTGATATTTTGACTCTTACTGCCCGTGACTCGGTCGTCATTTTGGGAGGGCCAAATTGGGAAGTGAAATTGGGAAGAAGAGATTCAAAAACAGCGAGCTTCTCAGCCGCCAGCAGTGGCGTAATCCCTCCACCGACATCCACACTCGACAACCTCATCAACCGCTTTGGTGCCTTAGGCCTTTCTGCCAAAGACATGGTTGCCTTGTCGGGTGCTCACACCATAGGCCTAGCAAGGTGTACCTCTTTCCGAAACCGCATATATAACGAGACTAACATCGACCCTTCATTCGCGAAGCTAAGACAAAGCAACTGCCCGAGAAGCGGAGGAGATGACAACCTTGCCCCTCTCGACGTGGCGACGCCGAAGCTTTTCGACAACAATTACTACAAGAACCTTTTGGTGAAGAAAGGCCTCCTTCATTCCGACCAGATCCTTCATGACGGTGGATCCACTGATTCGTTGGTGGAATTATACAGTAAAAATGATAGGACTTTTGATGCTGATTTCGTGGCTGCAATGATTAGAATGGGAGATATCAAACCACTCACAGGGTCTCAGGGTGAGATCAGAAAAGTGTGTAGCAAACCTAACTAA | 2346 | 47.1 | MAIKTSISNKMSMALALALLAMFIGSSSAQLSPNFYYKTCPKLLRIVQAGVRSAVTKEARMGASLLRLHFHDCFVNGCDGSILLEDTPTFTGEQTAAPNNRSVRGFDVIESIKKNVEKVCPGVVSCADIVTLSARDSVVALGGPSWKVKLGRRDSKTASFSDVTGAIPPPTSTLQTLINRFNTKGLSPRDLVALSGAHTIGQARCLFFKDRIYNESNIDESFAEERQRNCPRNGGDDNRAPLDFRTPKLFDNYYYKNLLEKKALLRSDQVLHDGGSTDSLVELYGDDTDAFESDFVAAMIKMGDIEPLTGSQGEIRKLCTCHQTTEPSQSTSVVDPILPPSSTELTTHNLPPSSIPTLVAPPLVQNRHSMQTRGKSGISKKRVFLANVTSSPHEPTSFTQANKSTNWRDAMIDEFEALKNQKTWDLTPLPPYKHLIGWPNQTTIMSTTLLFLNLKNLHCFPKQMAITTKSLVVLVLAFLFMGNSSAQLSTSFYYKTCPKLLSTVRSGVLSAISKETRIGASLLRLHFHDCFVNGCDGSILLADTPSFRGEQTAPPNIRSVRGFNVIEAIKSSVEKLCPGVVSCADILTLTARDSVVILGGPNWEVKLGRRDSKTASFSAASSGVIPPPTSTLDNLINRFGALGLSAKDMVALSGAHTIGLARCTSFRNRIYNETNIDPSFAKLRQSNCPRSGGDDNLAPLDVATPKLFDNNYYKNLLVKKGLLHSDQILHDGGSTDSLVELYSKNDRTFDADFVAAMIRMGDIKPLTGSQGEIRKVCSKPN | 781 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 45708736 | 45727731 | + | Sed0026280.1 | Sed05g3806 | 716432 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed05g3806 | 781 | CDD | secretory_peroxidase | 487 | 779 | IPR033905 | GO:0004601(InterPro)|GO:0042744(InterPro) | |
| Sed05g3806 | 781 | PRINTS | Plant peroxidase signature | 715 | 732 | IPR000823 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Sed05g3806 | 781 | PRINTS | Plant peroxidase signature | 599 | 614 | IPR000823 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Sed05g3806 | 781 | PRINTS | Plant peroxidase signature | 699 | 714 | IPR000823 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Sed05g3806 | 781 | PRINTS | Plant peroxidase signature | 647 | 659 | IPR000823 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Sed05g3806 | 781 | PRINTS | Plant peroxidase signature | 521 | 541 | IPR000823 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Sed05g3806 | 781 | PRINTS | Plant peroxidase signature | 755 | 768 | IPR000823 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Sed05g3806 | 781 | PRINTS | Plant peroxidase signature | 497 | 516 | IPR000823 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Sed05g3806 | 781 | PRINTS | Plant peroxidase signature | 561 | 574 | IPR000823 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Sed05g3806 | 781 | PRINTS | Plant peroxidase signature | 580 | 590 | IPR000823 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Sed05g3806 | 781 | Gene3D | Peroxidase, domain 2 | 626 | 760 | - | - | |
| Sed05g3806 | 781 | Gene3D | Peroxidase, domain 2 | 168 | 302 | - | - | |
| Sed05g3806 | 781 | ProSiteProfiles | Plant heme peroxidase family profile. | 487 | 781 | IPR002016 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Sed05g3806 | 781 | ProSitePatterns | Peroxidases active site signature. | 519 | 530 | IPR019794 | GO:0004601(InterPro) | |
| Sed05g3806 | 781 | Gene3D | - | 34 | 319 | - | - | |
| Sed05g3806 | 781 | SUPERFAMILY | Heme-dependent peroxidases | 487 | 781 | IPR010255 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Sed05g3806 | 781 | Pfam | Peroxidase | 47 | 286 | IPR002016 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Sed05g3806 | 781 | Pfam | Peroxidase | 504 | 745 | IPR002016 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Sed05g3806 | 781 | SUPERFAMILY | Heme-dependent peroxidases | 30 | 320 | IPR010255 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Sed05g3806 | 781 | FunFam | Peroxidase | 626 | 760 | - | - | |
| Sed05g3806 | 781 | PRINTS | Haem peroxidase superfamily signature | 599 | 611 | IPR002016 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Sed05g3806 | 781 | PRINTS | Haem peroxidase superfamily signature | 701 | 716 | IPR002016 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Sed05g3806 | 781 | PRINTS | Haem peroxidase superfamily signature | 648 | 663 | IPR002016 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Sed05g3806 | 781 | PRINTS | Haem peroxidase superfamily signature | 519 | 533 | IPR002016 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Sed05g3806 | 781 | PRINTS | Haem peroxidase superfamily signature | 581 | 598 | IPR002016 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Sed05g3806 | 781 | ProSitePatterns | Peroxidases proximal heme-ligand signature. | 648 | 658 | IPR019793 | - | |
| Sed05g3806 | 781 | Gene3D | - | 492 | 778 | - | - | |
| Sed05g3806 | 781 | ProSitePatterns | Peroxidases proximal heme-ligand signature. | 190 | 200 | IPR019793 | - | |
| Sed05g3806 | 781 | FunFam | Peroxidase | 168 | 302 | - | - | |
| Sed05g3806 | 781 | PANTHER | PEROXIDASE 72-RELATED | 473 | 779 | IPR000823 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Sed05g3806 | 781 | FunFam | Peroxidase | 34 | 176 | - | - | |
| Sed05g3806 | 781 | ProSitePatterns | Peroxidases active site signature. | 62 | 73 | IPR019794 | GO:0004601(InterPro) | |
| Sed05g3806 | 781 | CDD | secretory_peroxidase | 30 | 319 | IPR033905 | GO:0004601(InterPro)|GO:0042744(InterPro) | |
| Sed05g3806 | 781 | ProSiteProfiles | Plant heme peroxidase family profile. | 30 | 323 | IPR002016 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Sed05g3806 | 781 | FunFam | Peroxidase | 491 | 631 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed01g0806 | Sed-Chr1:5960997 | Sed05g3806 | Sed-Chr5:45708736 | 4.50E-152 | dispersed | |
| Sed01g0807 | Sed-Chr1:5970297 | Sed05g3806 | Sed-Chr5:45708736 | 3.00E-159 | dispersed | |
| Sed01g1222 | Sed-Chr1:9111281 | Sed05g3806 | Sed-Chr5:45708736 | 1.70E-117 | dispersed | |
| Sed03g0351 | Sed-Chr3:2118743 | Sed05g3806 | Sed-Chr5:45708736 | 5.00E-106 | dispersed | |
| Sed05g3806 | Sed-Chr5:45708736 | Sed06g1480 | Sed-Chr6:39529727 | 7.20E-98 | dispersed | |
| Sed05g3805 | Sed-Chr5:45703213 | Sed05g3806 | Sed-Chr5:45708736 | 1.50E-134 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed05g3806 | K00430 | - | rcu:8265433 | 626.706 |