Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed05g3807 | ATGGATAATAAGCACATTGTGGTGGTTCAAAATTATGAATTAGGGAGATTACTCGGCCAAGGAACCTTTGCAAAGGTATATTATGGGAGGAATACAGGAACTAATCAAAGTGTAGCTATTAAGGTGATTGATAAAGAAAAGGTCACGAAGGCTTCACTTATCGAACAGATTAAGCGAGAAATATCTATTATGAGACTTGTTAGACATCCTAATATTGTACATTTATATGAGGTTATGGCCACAAAATCAAAGATCTACTTTGTCTTGGAATATGCTAAAGGTGGTGAGCTCTTTGACAAGGTTGCAAAAGGAAGGCTGAAGGAGGATGTTGCTTGGAAATACTTTTATCAGTTAATCAATGCTGTTGATTTTTGTCACAGTAGGGGGGTATATCACCGCGATATAAAGCCAGAGAACCTACTGCTTGATGAAAACGAGAATCTTAAGGTGTCGGATTTCGGTTTAAGTGCTTTAGCTGAGTCCAAGCGTCAAGATGGGTTGCTGCACACCACTTGTGGTACACCAGCTTATGTTGCCCCTGAGGTCATCAGTAGGAAGGGCTATGATGGTGCAAAAGCCGATATCTGGTCTTGTGGAGTAGTTTTGTTTGTCTTATTGGCAGGTTATCTCCCATTCCACGAATCGAATTTGATGGAGATGTATAGGAAGATTGGAAAAGCGGATTATAAATGCCCTAGTTGGTTCCCTCGCGAAGTAAGGAGGTTGCTAACCAGGATTCTTGATCCAAACCCCATTACTAGAACTTCCATAGCAATGATAAGACAAAGTTCTTGGTTCAAAAAAGGATTGAGGTCAAAGATGTTAAGAAGGGAATTAGGAATCGATGCTAAAGAGACTGAAGATACAGATAGTTGTAGTGTCTCAACAGATGGAAATCATGAGCCAGATAGACCTCAGACTTTGAATGCTTTCGATATCATCTCCCTTTCCGCCGGATTCAATCTATCTGGTTTATTTGAAGACAATTCAAAGAAGAAAGAAACATTGTTTACTTGTAGAAAACCAGCCTCTGTTATCCTCTCAAAGCTAGAAGAAGTTGCTAAACTTCTCCGGTTTCGACTCCAGAAGAAGGAAGCAGGCCTACTGAAGTTTGAGGCGCTAACAGAGGGTAAGAAGGGGGCATTGTCCATTGATACAGAGATCTTTGAGGTTACTCCATCTTTTTATTTGGTGGAGATGAAAAAATCTAATGGAGACACAATGGAATATCAGAAGATATTGAAAGAGGACATAAGGCCAGCTTTACAGGACATTGTATGGGTATGGCGAGGAGAGCAGGAGGAGGAGGAGCAACAACAGCCCCTCCAACCACAGGATCGGGAATGGGATCCATATCCAGAGCAGGAGGGTGCATCACAACAGCAGTACCTGCTCGAAGAAGAACAACTCACAAAAAAGATCGGTTTGCAAGGATCTTAG | 1440 | 41.46 | MDNKHIVVVQNYELGRLLGQGTFAKVYYGRNTGTNQSVAIKVIDKEKVTKASLIEQIKREISIMRLVRHPNIVHLYEVMATKSKIYFVLEYAKGGELFDKVAKGRLKEDVAWKYFYQLINAVDFCHSRGVYHRDIKPENLLLDENENLKVSDFGLSALAESKRQDGLLHTTCGTPAYVAPEVISRKGYDGAKADIWSCGVVLFVLLAGYLPFHESNLMEMYRKIGKADYKCPSWFPREVRRLLTRILDPNPITRTSIAMIRQSSWFKKGLRSKMLRRELGIDAKETEDTDSCSVSTDGNHEPDRPQTLNAFDIISLSAGFNLSGLFEDNSKKKETLFTCRKPASVILSKLEEVAKLLRFRLQKKEAGLLKFEALTEGKKGALSIDTEIFEVTPSFYLVEMKKSNGDTMEYQKILKEDIRPALQDIVWVWRGEQEEEEQQQPLQPQDREWDPYPEQEGASQQQYLLEEEQLTKKIGLQGS | 479 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 45731243 | 45734209 | + | Sed0022877.1 | Sed05g3807 | 716433 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed05g3807 | 479 | CDD | CIPK_C | 309 | 423 | - | - | |
Sed05g3807 | 479 | MobiDBLite | consensus disorder prediction | 435 | 462 | - | - | |
Sed05g3807 | 479 | FunFam | Non-specific serine/threonine protein kinase | 5 | 305 | - | - | |
Sed05g3807 | 479 | FunFam | Non-specific serine/threonine protein kinase | 303 | 427 | - | - | |
Sed05g3807 | 479 | SMART | serkin_6 | 12 | 266 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed05g3807 | 479 | ProSiteProfiles | Protein kinase domain profile. | 12 | 266 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed05g3807 | 479 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 130 | 142 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed05g3807 | 479 | Pfam | NAF domain | 305 | 363 | IPR004041 | GO:0007165(InterPro) | |
Sed05g3807 | 479 | Gene3D | Kinase associated domain 1, KA1 | 309 | 428 | - | - | |
Sed05g3807 | 479 | Pfam | Protein kinase domain | 12 | 266 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed05g3807 | 479 | MobiDBLite | consensus disorder prediction | 435 | 453 | - | - | |
Sed05g3807 | 479 | ProSiteProfiles | NAF domain profile. | 303 | 327 | IPR018451 | GO:0007165(InterPro) | |
Sed05g3807 | 479 | Gene3D | Transferase(Phosphotransferase) domain 1 | 4 | 308 | - | - | |
Sed05g3807 | 479 | PANTHER | CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED | 7 | 416 | - | GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER) | |
Sed05g3807 | 479 | CDD | STKc_SnRK3 | 12 | 265 | - | - | |
Sed05g3807 | 479 | FunFam | Non-specific serine/threonine protein kinase | 3 | 91 | - | - | |
Sed05g3807 | 479 | SUPERFAMILY | Protein kinase-like (PK-like) | 8 | 298 | IPR011009 | - | |
Sed05g3807 | 479 | ProSitePatterns | Protein kinases ATP-binding region signature. | 18 | 41 | IPR017441 | GO:0005524(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed01g0804 | Sed-Chr1:5956745 | Sed05g3807 | Sed-Chr5:45731243 | 3.60E-222 | dispersed | |
Sed01g0805 | Sed-Chr1:5956745 | Sed05g3807 | Sed-Chr5:45731243 | 3.60E-222 | dispersed | |
Sed05g3807 | Sed-Chr5:45731243 | Sed14g0587 | Sed-Chr14:5939868 | 5.20E-176 | dispersed | |
Sed05g3807 | Sed-Chr5:45731243 | Sed05g3808 | Sed-Chr5:45731243 | 1.70E-275 | tandem | |
Sed01g0802 | Sed-Chr1:5953366 | Sed05g3807 | Sed-Chr5:45731243 | 1.10E-111 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
79301 | PF00069 | Pkinase | 9.40E-75 | CL0016 | Sed | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed05g3807 | - | - | - | 0.0 |