Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g3807 ATGGATAATAAGCACATTGTGGTGGTTCAAAATTATGAATTAGGGAGATTACTCGGCCAAGGAACCTTTGCAAAGGTATATTATGGGAGGAATACAGGAACTAATCAAAGTGTAGCTATTAAGGTGATTGATAAAGAAAAGGTCACGAAGGCTTCACTTATCGAACAGATTAAGCGAGAAATATCTATTATGAGACTTGTTAGACATCCTAATATTGTACATTTATATGAGGTTATGGCCACAAAATCAAAGATCTACTTTGTCTTGGAATATGCTAAAGGTGGTGAGCTCTTTGACAAGGTTGCAAAAGGAAGGCTGAAGGAGGATGTTGCTTGGAAATACTTTTATCAGTTAATCAATGCTGTTGATTTTTGTCACAGTAGGGGGGTATATCACCGCGATATAAAGCCAGAGAACCTACTGCTTGATGAAAACGAGAATCTTAAGGTGTCGGATTTCGGTTTAAGTGCTTTAGCTGAGTCCAAGCGTCAAGATGGGTTGCTGCACACCACTTGTGGTACACCAGCTTATGTTGCCCCTGAGGTCATCAGTAGGAAGGGCTATGATGGTGCAAAAGCCGATATCTGGTCTTGTGGAGTAGTTTTGTTTGTCTTATTGGCAGGTTATCTCCCATTCCACGAATCGAATTTGATGGAGATGTATAGGAAGATTGGAAAAGCGGATTATAAATGCCCTAGTTGGTTCCCTCGCGAAGTAAGGAGGTTGCTAACCAGGATTCTTGATCCAAACCCCATTACTAGAACTTCCATAGCAATGATAAGACAAAGTTCTTGGTTCAAAAAAGGATTGAGGTCAAAGATGTTAAGAAGGGAATTAGGAATCGATGCTAAAGAGACTGAAGATACAGATAGTTGTAGTGTCTCAACAGATGGAAATCATGAGCCAGATAGACCTCAGACTTTGAATGCTTTCGATATCATCTCCCTTTCCGCCGGATTCAATCTATCTGGTTTATTTGAAGACAATTCAAAGAAGAAAGAAACATTGTTTACTTGTAGAAAACCAGCCTCTGTTATCCTCTCAAAGCTAGAAGAAGTTGCTAAACTTCTCCGGTTTCGACTCCAGAAGAAGGAAGCAGGCCTACTGAAGTTTGAGGCGCTAACAGAGGGTAAGAAGGGGGCATTGTCCATTGATACAGAGATCTTTGAGGTTACTCCATCTTTTTATTTGGTGGAGATGAAAAAATCTAATGGAGACACAATGGAATATCAGAAGATATTGAAAGAGGACATAAGGCCAGCTTTACAGGACATTGTATGGGTATGGCGAGGAGAGCAGGAGGAGGAGGAGCAACAACAGCCCCTCCAACCACAGGATCGGGAATGGGATCCATATCCAGAGCAGGAGGGTGCATCACAACAGCAGTACCTGCTCGAAGAAGAACAACTCACAAAAAAGATCGGTTTGCAAGGATCTTAG 1440 41.46 MDNKHIVVVQNYELGRLLGQGTFAKVYYGRNTGTNQSVAIKVIDKEKVTKASLIEQIKREISIMRLVRHPNIVHLYEVMATKSKIYFVLEYAKGGELFDKVAKGRLKEDVAWKYFYQLINAVDFCHSRGVYHRDIKPENLLLDENENLKVSDFGLSALAESKRQDGLLHTTCGTPAYVAPEVISRKGYDGAKADIWSCGVVLFVLLAGYLPFHESNLMEMYRKIGKADYKCPSWFPREVRRLLTRILDPNPITRTSIAMIRQSSWFKKGLRSKMLRRELGIDAKETEDTDSCSVSTDGNHEPDRPQTLNAFDIISLSAGFNLSGLFEDNSKKKETLFTCRKPASVILSKLEEVAKLLRFRLQKKEAGLLKFEALTEGKKGALSIDTEIFEVTPSFYLVEMKKSNGDTMEYQKILKEDIRPALQDIVWVWRGEQEEEEQQQPLQPQDREWDPYPEQEGASQQQYLLEEEQLTKKIGLQGS 479
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 45731243 45734209 + Sed0022877.1 Sed05g3807 716433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g3807 479 CDD CIPK_C 309 423 - -
Sed05g3807 479 MobiDBLite consensus disorder prediction 435 462 - -
Sed05g3807 479 FunFam Non-specific serine/threonine protein kinase 5 305 - -
Sed05g3807 479 FunFam Non-specific serine/threonine protein kinase 303 427 - -
Sed05g3807 479 SMART serkin_6 12 266 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g3807 479 ProSiteProfiles Protein kinase domain profile. 12 266 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g3807 479 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed05g3807 479 Pfam NAF domain 305 363 IPR004041 GO:0007165(InterPro)
Sed05g3807 479 Gene3D Kinase associated domain 1, KA1 309 428 - -
Sed05g3807 479 Pfam Protein kinase domain 12 266 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g3807 479 MobiDBLite consensus disorder prediction 435 453 - -
Sed05g3807 479 ProSiteProfiles NAF domain profile. 303 327 IPR018451 GO:0007165(InterPro)
Sed05g3807 479 Gene3D Transferase(Phosphotransferase) domain 1 4 308 - -
Sed05g3807 479 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 7 416 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Sed05g3807 479 CDD STKc_SnRK3 12 265 - -
Sed05g3807 479 FunFam Non-specific serine/threonine protein kinase 3 91 - -
Sed05g3807 479 SUPERFAMILY Protein kinase-like (PK-like) 8 298 IPR011009 -
Sed05g3807 479 ProSitePatterns Protein kinases ATP-binding region signature. 18 41 IPR017441 GO:0005524(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0804 Sed-Chr1:5956745 Sed05g3807 Sed-Chr5:45731243 3.60E-222 dispersed
Sed01g0805 Sed-Chr1:5956745 Sed05g3807 Sed-Chr5:45731243 3.60E-222 dispersed
Sed05g3807 Sed-Chr5:45731243 Sed14g0587 Sed-Chr14:5939868 5.20E-176 dispersed
Sed05g3807 Sed-Chr5:45731243 Sed05g3808 Sed-Chr5:45731243 1.70E-275 tandem
Sed01g0802 Sed-Chr1:5953366 Sed05g3807 Sed-Chr5:45731243 1.10E-111 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79301 PF00069 Pkinase 9.40E-75 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g3807 - - - 0.0