Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g3809 ATGCCGGAGATCGAAGCTCTCGCCGGCGACGACAATGCTCTGTTCGGCAAGTACGAGCTCGGCAAGATCCTCGGCTGCGGCGCCTTCGCCAAGGTCTACCATGGCCGCGACCTCCGCTCCGGCCAAAGCGTCGCCGTTAAAGTCATCAACAAGAAGAAGATCTACGGCACAACGCTCATGTTCAACATCAAGCGCGAGGTCGCCATCATGCGCCGGCTCCGCCACCCTAACATCGTCAAACTCCATGAGATTCTCGCCACAAAAACCAAGATCTACTTCGTCATGGAGTTCGTCAAAGGCGGCGAGCTCTTCGCCAAGGTCGCCAAGGGCCGATTCAGCGAGGATTTGAGCCGGAAATTCTTCCAGCAGTTGATCTCCGCCGTCGGATTCTGTCACGTTCGAGGAATCTACCACCGCGATCTGAAGCCGGAGAATCTCCTCGTCGACGAGAATGGAAATCTGAAGGTCTCGGACTTCGGTCTCAGCGCGGTAACGGACCAGATCCGTTCCGACGGCCTTTTGCATACTCTCTGTGGAACACCGGCGTACGTCGCGCCGGAGATCCTATCGAAGAAAGGCTACGACGGTGCGAAAATCGATGTCTGGTCCTGTGGTGTGATTCTTTTCGTGTTGAACGCTGGCTACCTTCCGTTCAACGATCCGAATTTAATGGCGATGTACAAGAAGATTTACCAGGGAGAATATCGGTGCCCTAAATGGATGTCGCCGGATCTCAAGAGATTCTTATCGCGACTTCTCGACACGAATCCACAGTCGAGAATCACAATCGATGAGATTCTGAACGATCCGTGGTTCAGAGAAGGATCAGATACGGAGATCAGTTTCTACGATGATTACGAGATGAAATTGGAAGAGAAAAACGAATCGCAATCGACGAATTTGAACGCATTCGACATTATATCGTTCTCTTCAGGATTAAATCTGTCTGGTTTGTTCCAAAATTCGCAGAACGCGGTGGAGGAAAGTGAGCGATTCATATCCGCAGATTCGCCGGAGACGATCGTGGAAAAACTGGAGGAGTTCGGTAGGGCGGAGAGTTTGAAGGTGAAGAAGGAGAAGGAATTTGGGGTTGAATTGAATGGACAGAATCGGAATTTGCTAATCGGAATTGAAATTTTCCGGTTAACCGACGAATTGGTGGTGGTGGAAGCTAGAAGACGAGGTGGGGATGCAGAATTGTGTAAGGAATTGTTGAAGAAGAAGCTGAAACGTCATCTCGCCGGAAACGAAGCTTCGACGTCGACGTCGCAACAAGATTCCGGCGACCAAAACCAGTAA 1299 50.96 MPEIEALAGDDNALFGKYELGKILGCGAFAKVYHGRDLRSGQSVAVKVINKKKIYGTTLMFNIKREVAIMRRLRHPNIVKLHEILATKTKIYFVMEFVKGGELFAKVAKGRFSEDLSRKFFQQLISAVGFCHVRGIYHRDLKPENLLVDENGNLKVSDFGLSAVTDQIRSDGLLHTLCGTPAYVAPEILSKKGYDGAKIDVWSCGVILFVLNAGYLPFNDPNLMAMYKKIYQGEYRCPKWMSPDLKRFLSRLLDTNPQSRITIDEILNDPWFREGSDTEISFYDDYEMKLEEKNESQSTNLNAFDIISFSSGLNLSGLFQNSQNAVEESERFISADSPETIVEKLEEFGRAESLKVKKEKEFGVELNGQNRNLLIGIEIFRLTDELVVVEARRRGGDAELCKELLKKKLKRHLAGNEASTSTSQQDSGDQNQ 432
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 45736155 45738166 - Sed0019698.1 Sed05g3809 716435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g3809 432 Pfam NAF domain 299 358 IPR004041 GO:0007165(InterPro)
Sed05g3809 432 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 13 402 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Sed05g3809 432 ProSiteProfiles NAF domain profile. 296 320 IPR018451 GO:0007165(InterPro)
Sed05g3809 432 MobiDBLite consensus disorder prediction 411 432 - -
Sed05g3809 432 ProSitePatterns Serine/Threonine protein kinases active-site signature. 136 148 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed05g3809 432 Gene3D Kinase associated domain 1, KA1 297 415 - -
Sed05g3809 432 Gene3D Phosphorylase Kinase; domain 1 5 99 - -
Sed05g3809 432 Pfam Protein kinase domain 18 272 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g3809 432 ProSitePatterns Protein kinases ATP-binding region signature. 24 47 IPR017441 GO:0005524(InterPro)
Sed05g3809 432 FunFam Non-specific serine/threonine protein kinase 10 97 - -
Sed05g3809 432 Gene3D Transferase(Phosphotransferase) domain 1 100 278 - -
Sed05g3809 432 ProSiteProfiles Protein kinase domain profile. 18 272 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g3809 432 SMART serkin_6 18 272 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g3809 432 CDD CIPK_C 302 399 - -
Sed05g3809 432 FunFam Non-specific serine/threonine protein kinase 8 301 - -
Sed05g3809 432 SUPERFAMILY Protein kinase-like (PK-like) 15 285 IPR011009 -
Sed05g3809 432 MobiDBLite consensus disorder prediction 415 432 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0802 Sed-Chr1:5953366 Sed05g3809 Sed-Chr5:45736155 3.60E-208 dispersed
Sed03g2444 Sed-Chr3:22435935 Sed05g3809 Sed-Chr5:45736155 3.10E-140 dispersed
Sed05g3809 Sed-Chr5:45736155 Sed14g0586 Sed-Chr14:5909432 3.90E-138 dispersed
Sed05g3808 Sed-Chr5:45731243 Sed05g3809 Sed-Chr5:45736155 1.80E-112 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79303 PF00069 Pkinase 2.00E-71 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g3809 - - - 0.0