Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g3816 ATGGCCAGCTTCCCTCATGAAGATCCAAACCCTAATTCTAACCCTAACCCTTATTACACTCATTTCCCACCAATTCTCGACCATACTTCCTTCTTCGATTTCGAGATCTCTGATTTTCTCGTGTTCGGTGACGACGAAAACAGCGTCGACCAACAAGCTGCATCGTCGTCACCGAGCATCCTCTCGTCAGAGAAGATCACGGGAGTGGACAGTGGTGGCAGTGGCACTGCAGCCGACAGCGGATCGAGCGTCGTAGTTTCGTCGGGTAGGCCGACATCCATAAGATCAAGCAAAAGTGGGGAGAAGAAAAGGAAAGGGGAAATAGGGCGTAGGGTTGCATTCAGAACCAAATCAGAAGTAGAGATTATGGATGATGGCTACAAATGGAGAAAATATGGCAAAAAGTCTGTTAAGAACAGCCCAAATCCCAGAAATTACTATAAATGTTCAAGTGAAGGATGCAGTGTGAAAAAAAAGGTGGAAAGAGATAGAGAAGATGCAAGCTATGTGATAACTAGTTATGAGGGAGTACACAACCATGAGAGTCCCTTTGTTGTGTATTACAATCAAATGCCTTCCTTTAACTCTACTCCTACTTAA 600 44.67 MASFPHEDPNPNSNPNPYYTHFPPILDHTSFFDFEISDFLVFGDDENSVDQQAASSSPSILSSEKITGVDSGGSGTAADSGSSVVVSSGRPTSIRSSKSGEKKRKGEIGRRVAFRTKSEVEIMDDGYKWRKYGKKSVKNSPNPRNYYKCSSEGCSVKKKVERDREDASYVITSYEGVHNHESPFVVYYNQMPSFNSTPT 199
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 45793908 45797743 - Sed0026200.1 Sed05g3816 716442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g3816 199 ProSiteProfiles WRKY domain profile. 118 183 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed05g3816 199 FunFam WRKY transcription factor 57 109 183 - -
Sed05g3816 199 SMART WRKY_cls 123 182 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed05g3816 199 MobiDBLite consensus disorder prediction 1 20 - -
Sed05g3816 199 Gene3D WRKY domain 108 184 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed05g3816 199 SUPERFAMILY WRKY DNA-binding domain 115 183 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed05g3816 199 MobiDBLite consensus disorder prediction 48 95 - -
Sed05g3816 199 Pfam WRKY DNA -binding domain 124 181 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed05g3816 199 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 72 188 IPR044810 GO:0003700(InterPro)
Sed05g3816 199 MobiDBLite consensus disorder prediction 48 110 - -
Sed05g3816 199 MobiDBLite consensus disorder prediction 96 110 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0066 Sed-Chr1:689579 Sed05g3816 Sed-Chr5:45793908 1.70E-72 dispersed
Sed05g3816 Sed-Chr5:45793908 Sed10g0448 Sed-Chr10:2821915 9.80E-36 dispersed
Sed05g3816 Sed-Chr5:45793908 Sed05g3824 Sed-Chr5:45835783 2.20E-19 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38760 PF03106 WRKY 3.90E-23 CL0274 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g3816 - - - 0.0