Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g3824 ATGGGCTCTAAATCCCAAGTTCTTTTGAACCCACAAGCTTTGTTTGAAGATCAAGATCATAATCAACAACAAGCATCCTCAACTGATCAATCAGCTCATTCTCAAATGGGATTTTTCTCTTACCCTAATTCAAACTTAACTTTTTTTCAACTCCCTTCAATTCCTCAACAAAACCCTTCTCCTTCCCCTCCATTTGAAACCCCTTCTCCTAATTTCTTCACTTCCAATAGTAATATTAACCTCTCTGAAACCCTAATTTCTTCTTTTTTGCCCCTCAAGCCCTCCCCATCTTTTGATTTTGCACCTCAACACCTCCTTTCCTTGCAAACCTCCACTCCAAATCTATGGCCATGGGGAGAGGTTGGAGAGAAATTGATGAGTGGGAAGAGAAATGAGTATCAATTGGGAGTGTCAACCATGAAGATGAAGAAGATGAAAGGAAGAAGAAAGGTAAGAGAGCCAAGATTCTCTTTCAAGACCATGAGTGATGTGGATGTTCTTGACGACGGTTACAAATGGCGAAAGTATGGACAGAAAATTGTCAAAAACACACAACATCCTAGAAGCTATTATCGTTGTACACAAGATCCATGTAGGGTAAAGAAAAGAGTAGAGAGATTAGCTGAGGATCCAAGAATGGTTATCACAACTTATGAAGGAAGACATATTCATTCTCCTTCTCATGATTCTGAAGACTCTGAAGCTCAAGCCCATCTCAACAATTTCTTTTGGTAA 735 39.46 MGSKSQVLLNPQALFEDQDHNQQQASSTDQSAHSQMGFFSYPNSNLTFFQLPSIPQQNPSPSPPFETPSPNFFTSNSNINLSETLISSFLPLKPSPSFDFAPQHLLSLQTSTPNLWPWGEVGEKLMSGKRNEYQLGVSTMKMKKMKGRRKVREPRFSFKTMSDVDVLDDGYKWRKYGQKIVKNTQHPRSYYRCTQDPCRVKKRVERLAEDPRMVITTYEGRHIHSPSHDSEDSEAQAHLNNFFW 244
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 45835783 45838418 + Sed0001009.1 Sed05g3824 716450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g3824 244 ProSiteProfiles WRKY domain profile. 162 227 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed05g3824 244 MobiDBLite consensus disorder prediction 1 36 - -
Sed05g3824 244 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 133 230 IPR044810 GO:0003700(InterPro)
Sed05g3824 244 FunFam WRKY transcription factor 57 153 227 - -
Sed05g3824 244 SMART WRKY_cls 167 226 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed05g3824 244 Pfam WRKY DNA -binding domain 168 224 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed05g3824 244 Gene3D WRKY domain 154 220 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed05g3824 244 SUPERFAMILY WRKY DNA-binding domain 159 226 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0063 Sed-Chr1:643492 Sed05g3824 Sed-Chr5:45835783 1.90E-70 dispersed
Sed05g3824 Sed-Chr5:45835783 Sed12g0015 Sed-Chr12:102659 1.70E-34 dispersed
Sed05g3816 Sed-Chr5:45793908 Sed05g3824 Sed-Chr5:45835783 2.20E-19 proximal
Sed01g0062 Sed-Chr1:643492 Sed05g3824 Sed-Chr5:45835783 1.60E-101 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38761 PF03106 WRKY 2.00E-24 CL0274 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g3824 - - - 0.0