Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed05g3831 | ATGGAGATTGGATCAAAAGACAACAACAACAGCTGGTTCCTCCTTACCCTTCCCTACGTTCTTGGTTGGGAAAACTCCTGTTTGGCTCTCCTCCTTGCCTCTCTCACCCTCGCCCTTCTCACTTGGCTTTTCGCCACCGGGGGTCCGGCCTGGTGCCATGGACGGACCGGGAAAGGCCGCGTCCCCATTCCCGGTCCACGTGGCCTCCCAATTGTCGGGAGTTTGTTCACGTTAAGCCGCGGCTTACCGCACCGGGCCCTGGCTTCCATGGCAGCCGCCCGAGCCAATTCCCAGCTCATGGCCTTCAGTCTCGGCTCGACCCCTGTCGTCGTTGCTTCCGACCCCACCGTGGCCAAGGAAATCCTAACCAACGCTCACTTCGCCGACCGCCCGCTCAAGCAGTCGGCTAAAAGCCTAATGTTCGGTCGAGCCATTGGGTTCGCACCGAACGGCGCCTACTGGCGCCTACTGCGCCGAATCGCCTCCACCCATCTTTTCTCTCCCAAGCGCATCGCGGCGCACGAGCCGGCTCGGCAGACGGAATGTGGCGCCATGCTACAGAGCATTGACGCCGACCAAACCCACCATGGGCGTGTCGTTCTGAGGAAGCACCTTCAAGCGGCGGCGCTGAACAACGTTATGTGGAGCGTATTCGGGAAGCGGTTCGAGCCGATGGATTCGGAATTGGAAGCGGTTCGGGGTTTGGTTCGAGAAGGGTTCGAGCTGCTGGGTGCGTTTAATTGGTCGGATCACCTCCCCTGGCTGGGTTGGTTCTACGACCCGTGCCGTATCAACCAACGCTGCGCTCAACTTGTCCCTAAAGTCACCCACTTCGTTCAAGGCGTAATCAATGAACACCGCCGCCGTAAAACCCTCACCGACGGCTCCGATTTTGTCGACGTTCTGCTTCATCTTGACGGCGATGAGAAACTCTCCGACGAGGACATGGTCGCCGTTTTATGGGAAATGATTTTCAGAGGAACGGATACGGTTGCGCTGCTAACGGAATGGGCGATGGCGGAGTTGGTTTTGAATCCGGACGTTCAGGAGGAAGTTAGAAGGGAAATCTCGAGGGCGGTGGGCGGTGACGGAAGGAGCCTCACGGACGCCGACGTGGCGAAACTGCCTTACCTGCAGGCGGTGGTGAAGGAGACGCTGCGGCTGCACCCCCCGGGCCCACTCCTGTCGTGGGCCCGCCTCTCTTCGGCGGACGTCCAGCTCAGCAACGGCATGCTCATCCCGGAGAACACAACCGCCATGGTGAACATGTGGGCCATCACGCACGACCCGCACGTATGGGAGGATCCACACGTGTTCAACCCGGGGAGGTTTCGGGGGGCTGACGTGGACGTCAGGGGCAGCGACCTCCGCCTGGCGCCGTTTGGGGCAGGGCGGCGGGTCTGCCCGGGGAAGAACCTCGGGCTTGTCACTGTCACGCTTTGGGTGGCCCAATTGGTTAATCACTTCAAATGGGCCCCCGACCCGGCCCACCCCGTCGACCTAACCGAACTGCTCAAGCTATCCTGCGAAATGAAAAACCCTCTTCGTGCTGTTGCCGTCAAAACACGTGGCCTTTAG | 1578 | 60.27 | MEIGSKDNNNSWFLLTLPYVLGWENSCLALLLASLTLALLTWLFATGGPAWCHGRTGKGRVPIPGPRGLPIVGSLFTLSRGLPHRALASMAAARANSQLMAFSLGSTPVVVASDPTVAKEILTNAHFADRPLKQSAKSLMFGRAIGFAPNGAYWRLLRRIASTHLFSPKRIAAHEPARQTECGAMLQSIDADQTHHGRVVLRKHLQAAALNNVMWSVFGKRFEPMDSELEAVRGLVREGFELLGAFNWSDHLPWLGWFYDPCRINQRCAQLVPKVTHFVQGVINEHRRRKTLTDGSDFVDVLLHLDGDEKLSDEDMVAVLWEMIFRGTDTVALLTEWAMAELVLNPDVQEEVRREISRAVGGDGRSLTDADVAKLPYLQAVVKETLRLHPPGPLLSWARLSSADVQLSNGMLIPENTTAMVNMWAITHDPHVWEDPHVFNPGRFRGADVDVRGSDLRLAPFGAGRRVCPGKNLGLVTVTLWVAQLVNHFKWAPDPAHPVDLTELLKLSCEMKNPLRAVAVKTRGL | 525 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 45918827 | 45921163 | - | Sed0006010.1 | Sed05g3831 | 716457 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed05g3831 | 525 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 461 | 470 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Sed05g3831 | 525 | Gene3D | Cytochrome P450 | 52 | 522 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed05g3831 | 525 | PRINTS | P450 superfamily signature | 468 | 479 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed05g3831 | 525 | PRINTS | P450 superfamily signature | 380 | 391 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed05g3831 | 525 | PRINTS | P450 superfamily signature | 459 | 468 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed05g3831 | 525 | PRINTS | P450 superfamily signature | 326 | 343 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed05g3831 | 525 | FunFam | Cytochrome P450 78A5 | 55 | 523 | - | - | |
| Sed05g3831 | 525 | PRINTS | E-class P450 group I signature | 379 | 397 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed05g3831 | 525 | PRINTS | E-class P450 group I signature | 335 | 361 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed05g3831 | 525 | PRINTS | E-class P450 group I signature | 315 | 332 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed05g3831 | 525 | PRINTS | E-class P450 group I signature | 468 | 491 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed05g3831 | 525 | PRINTS | E-class P450 group I signature | 422 | 446 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed05g3831 | 525 | PRINTS | E-class P450 group I signature | 93 | 112 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed05g3831 | 525 | PRINTS | E-class P450 group I signature | 458 | 468 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed05g3831 | 525 | PRINTS | E-class P450 group I signature | 208 | 226 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed05g3831 | 525 | SUPERFAMILY | Cytochrome P450 | 63 | 520 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed05g3831 | 525 | PANTHER | CYTOCHROME P450 78A7-RELATED | 7 | 518 | IPR051996 | - | |
| Sed05g3831 | 525 | Pfam | Cytochrome P450 | 64 | 499 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed05g3831 | 525 | CDD | CYP78 | 96 | 515 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed05g3831 | Sed-Chr5:45918827 | Sed09g0579 | Sed-Chr9:6589623 | 3.60E-130 | dispersed | |
| Sed05g3831 | Sed-Chr5:45918827 | Sed08g2131 | Sed-Chr8:35279533 | 5.80E-136 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed05g3831 | K20619 | - | csv:101214099 | 802.357 |