Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g3831 ATGGAGATTGGATCAAAAGACAACAACAACAGCTGGTTCCTCCTTACCCTTCCCTACGTTCTTGGTTGGGAAAACTCCTGTTTGGCTCTCCTCCTTGCCTCTCTCACCCTCGCCCTTCTCACTTGGCTTTTCGCCACCGGGGGTCCGGCCTGGTGCCATGGACGGACCGGGAAAGGCCGCGTCCCCATTCCCGGTCCACGTGGCCTCCCAATTGTCGGGAGTTTGTTCACGTTAAGCCGCGGCTTACCGCACCGGGCCCTGGCTTCCATGGCAGCCGCCCGAGCCAATTCCCAGCTCATGGCCTTCAGTCTCGGCTCGACCCCTGTCGTCGTTGCTTCCGACCCCACCGTGGCCAAGGAAATCCTAACCAACGCTCACTTCGCCGACCGCCCGCTCAAGCAGTCGGCTAAAAGCCTAATGTTCGGTCGAGCCATTGGGTTCGCACCGAACGGCGCCTACTGGCGCCTACTGCGCCGAATCGCCTCCACCCATCTTTTCTCTCCCAAGCGCATCGCGGCGCACGAGCCGGCTCGGCAGACGGAATGTGGCGCCATGCTACAGAGCATTGACGCCGACCAAACCCACCATGGGCGTGTCGTTCTGAGGAAGCACCTTCAAGCGGCGGCGCTGAACAACGTTATGTGGAGCGTATTCGGGAAGCGGTTCGAGCCGATGGATTCGGAATTGGAAGCGGTTCGGGGTTTGGTTCGAGAAGGGTTCGAGCTGCTGGGTGCGTTTAATTGGTCGGATCACCTCCCCTGGCTGGGTTGGTTCTACGACCCGTGCCGTATCAACCAACGCTGCGCTCAACTTGTCCCTAAAGTCACCCACTTCGTTCAAGGCGTAATCAATGAACACCGCCGCCGTAAAACCCTCACCGACGGCTCCGATTTTGTCGACGTTCTGCTTCATCTTGACGGCGATGAGAAACTCTCCGACGAGGACATGGTCGCCGTTTTATGGGAAATGATTTTCAGAGGAACGGATACGGTTGCGCTGCTAACGGAATGGGCGATGGCGGAGTTGGTTTTGAATCCGGACGTTCAGGAGGAAGTTAGAAGGGAAATCTCGAGGGCGGTGGGCGGTGACGGAAGGAGCCTCACGGACGCCGACGTGGCGAAACTGCCTTACCTGCAGGCGGTGGTGAAGGAGACGCTGCGGCTGCACCCCCCGGGCCCACTCCTGTCGTGGGCCCGCCTCTCTTCGGCGGACGTCCAGCTCAGCAACGGCATGCTCATCCCGGAGAACACAACCGCCATGGTGAACATGTGGGCCATCACGCACGACCCGCACGTATGGGAGGATCCACACGTGTTCAACCCGGGGAGGTTTCGGGGGGCTGACGTGGACGTCAGGGGCAGCGACCTCCGCCTGGCGCCGTTTGGGGCAGGGCGGCGGGTCTGCCCGGGGAAGAACCTCGGGCTTGTCACTGTCACGCTTTGGGTGGCCCAATTGGTTAATCACTTCAAATGGGCCCCCGACCCGGCCCACCCCGTCGACCTAACCGAACTGCTCAAGCTATCCTGCGAAATGAAAAACCCTCTTCGTGCTGTTGCCGTCAAAACACGTGGCCTTTAG 1578 60.27 MEIGSKDNNNSWFLLTLPYVLGWENSCLALLLASLTLALLTWLFATGGPAWCHGRTGKGRVPIPGPRGLPIVGSLFTLSRGLPHRALASMAAARANSQLMAFSLGSTPVVVASDPTVAKEILTNAHFADRPLKQSAKSLMFGRAIGFAPNGAYWRLLRRIASTHLFSPKRIAAHEPARQTECGAMLQSIDADQTHHGRVVLRKHLQAAALNNVMWSVFGKRFEPMDSELEAVRGLVREGFELLGAFNWSDHLPWLGWFYDPCRINQRCAQLVPKVTHFVQGVINEHRRRKTLTDGSDFVDVLLHLDGDEKLSDEDMVAVLWEMIFRGTDTVALLTEWAMAELVLNPDVQEEVRREISRAVGGDGRSLTDADVAKLPYLQAVVKETLRLHPPGPLLSWARLSSADVQLSNGMLIPENTTAMVNMWAITHDPHVWEDPHVFNPGRFRGADVDVRGSDLRLAPFGAGRRVCPGKNLGLVTVTLWVAQLVNHFKWAPDPAHPVDLTELLKLSCEMKNPLRAVAVKTRGL 525
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
5 45918827 45921163 - Sed0006010.1 Sed05g3831 716457
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Sed05g3831 525 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 461 470 IPR017972 GO:0005506(InterPro)|GO:0016705(InterPro)
Sed05g3831 525 Gene3D Cytochrome P450 52 522 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed05g3831 525 PRINTS P450 superfamily signature 468 479 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed05g3831 525 PRINTS P450 superfamily signature 380 391 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed05g3831 525 PRINTS P450 superfamily signature 459 468 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed05g3831 525 PRINTS P450 superfamily signature 326 343 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed05g3831 525 FunFam Cytochrome P450 78A5 55 523 - -
Sed05g3831 525 PRINTS E-class P450 group I signature 379 397 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed05g3831 525 PRINTS E-class P450 group I signature 335 361 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed05g3831 525 PRINTS E-class P450 group I signature 315 332 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed05g3831 525 PRINTS E-class P450 group I signature 468 491 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed05g3831 525 PRINTS E-class P450 group I signature 422 446 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed05g3831 525 PRINTS E-class P450 group I signature 93 112 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed05g3831 525 PRINTS E-class P450 group I signature 458 468 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed05g3831 525 PRINTS E-class P450 group I signature 208 226 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed05g3831 525 SUPERFAMILY Cytochrome P450 63 520 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed05g3831 525 PANTHER CYTOCHROME P450 78A7-RELATED 7 518 IPR051996 -
Sed05g3831 525 Pfam Cytochrome P450 64 499 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed05g3831 525 CDD CYP78 96 515 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g3831 Sed-Chr5:45918827 Sed09g0579 Sed-Chr9:6589623 3.60E-130 dispersed
Sed05g3831 Sed-Chr5:45918827 Sed08g2131 Sed-Chr8:35279533 5.80E-136 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g3831 K20619 - csv:101214099 802.357