Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g3837 ATGAAAGAAAAAAAAAGTTTTATGGCCGTGATTTTAATCCAAATAATATATTCCGGCATGTTTCTGCTGTCAAAGGCCGCATTTGACGGCGGAATGAACAATTTCGTATTTACTTTCTACCGCCAGGCAACGGCCACCATCATTCTTTCTCCCATTGCCTTCTTTATTGAAAGGAAAAATGCTCCACCCTTGACATTCATCACCTTCTGCAAGATTTTTATGCTTTCCTTATTCGGTATAGCCATGAGCTTGAATCTTTATGGGATTGCTCTTGTGTATACGTCAGCAACGTTAGCTGCTGCGACTACCAATTGTCTTCCCGTCATCACCTTCTTCGTTGCCCTCTTACTTAGGATGGAGGTTTTGAGATTGAAGTCAATAGCAGGGATTGGAAAGCTTGTGGGAATATTATTGTGTGTTGGTGGTGTAGGGATGTTGGCATTTTACAAAGGCCCTCAATTGAAGTTGTTTAATAATCATCATCTTTTTACTGCCCATTCTGCCCCTAATAATGTTGTTGCTTCCCCAAACTCTTGGTTGAAGGGTTGCTTTTTGATGATTTTTTCCAATACCTTATGGGGCATTTGGATTGTTCTTCAGGCATTTGTATTGAAAAGCTATCCTTCAAAACTTCTGTTAACAAGTCTTCAATGTATGTTAAGTTCATTTCAAACATTTGCAATGGCTATTGTAATGGAGAGAGACCCTCAGCAATGGAAACTGGGCTGGAATGTTAGGCTTCTGGCAGTGGCATATTGTGGTGTGGTGGTAACTGCTGTTACATATTGTCTTCAAGCATGGGTTATTGAGAAGAAAGGACCAGTTTTTCTAGCCATGTCCACACCATTTTCTCTTCTCATTACAACTTTCTTTTCTGCTATCCTTTTCGGCGAGAACATTACTCTTGGAAGAACTTTAGGGGGAGTTTTATTGGTTGGAGGACTGTATTTTGTGCTATGGGGAAAGAGCAAAGAGCAAGAGATAAGTGAAGGATTGAAAGCAAGTAGCAAAGAATGCAACACACAAGACAAGGACATCACAAAATTAGAGGATCATGAAAATTTACAATCTCCACTGGAAAATGTCTGA 1089 39.85 MKEKKSFMAVILIQIIYSGMFLLSKAAFDGGMNNFVFTFYRQATATIILSPIAFFIERKNAPPLTFITFCKIFMLSLFGIAMSLNLYGIALVYTSATLAAATTNCLPVITFFVALLLRMEVLRLKSIAGIGKLVGILLCVGGVGMLAFYKGPQLKLFNNHHLFTAHSAPNNVVASPNSWLKGCFLMIFSNTLWGIWIVLQAFVLKSYPSKLLLTSLQCMLSSFQTFAMAIVMERDPQQWKLGWNVRLLAVAYCGVVVTAVTYCLQAWVIEKKGPVFLAMSTPFSLLITTFFSAILFGENITLGRTLGGVLLVGGLYFVLWGKSKEQEISEGLKASSKECNTQDKDITKLEDHENLQSPLENV 362
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 45994624 46001794 - Sed0007505.1 Sed05g3837 716463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g3837 362 Pfam EamA-like transporter family 181 319 IPR000620 GO:0016020(InterPro)
Sed05g3837 362 Pfam EamA-like transporter family 8 137 IPR000620 GO:0016020(InterPro)
Sed05g3837 362 PANTHER WAT1-RELATED PROTEIN 8 335 IPR030184 GO:0005886(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro)
Sed05g3837 362 SUPERFAMILY Multidrug resistance efflux transporter EmrE 241 324 - -
Sed05g3837 362 SUPERFAMILY Multidrug resistance efflux transporter EmrE 40 150 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0040 Sed-Chr1:436529 Sed05g3837 Sed-Chr5:45994624 8.10E-161 dispersed
Sed05g3837 Sed-Chr5:45994624 Sed10g0481 Sed-Chr10:3062980 4.30E-90 dispersed
Sed05g3837 Sed-Chr5:45994624 Sed05g3840 Sed-Chr5:46024336 4.20E-117 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g3837 - - - 0.0