Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g3840 ATGAGAGAAAAGAAGGTATATTGTGGTTTGTTGGTGAGACATAGCATTTATGCAGTGATGTTCATACTCTCCAAAGCTGCATTTGATGGTGGAATGAACAGCTTTGTATTTGTTTTCTATAGACAAGCCATAGCCACCCTCTTCTTGTTTCCTATAGCTTTCTATTTTGAATGGAAAACTGCTCCACCCCTCTCATTCCTCACCTTTTGCAAGATCTTTCTGCTTTCTTTGATTGGGATGAGCATATGTCTAAATATGAATGGGGTTGCCCTTATATATACATCCCCAACTTTAGCTGCAGCAACCACCAATTGTATTCCTGTCATTACCTTCCTTTTTGCTCTTCTATTCAGGGTGGAGGGTTTGAAATTAAAGTCAAAAACAGGAATAGCAAAGGTTGGAGGAATAGTGATTTGTATGGGTGGTGTAATGATTTTGGCATTCTACATTGGCCCTCAACTCACAATCTTCAAGAATCATCACATTATTGCAACTCACAATAATCAACATAATCAACATGTTGCTTCATCCAAAACTTGGGTAAAGGGTACCTTCCTCATGCTGACATCAAATATCTTTTGGGGTTTATCACTTGTATTTCAGAACTTTGTGTTCAAAAGTTATCCTTCAACACTTTTATTCACTAGTCTTCAATGCCTTGCAAGTTCATTTCAATCCTTTATTGTTGCTGTTGCATTGGAGAGAAATTTTGAAGAATGGAAATTGGGTTGGAATGTTAGACTTCTTGCAGTGGCATATTGTGGAATAGTGGCAACTGGAGTTACATATTCTCTTCAAACATGGATTATTAAGAAGAAAGGACCAGTTTTTCTTGCCATGTCAACTCCAATTATTCTTGTCATTACAACTCTTTCTTCTGCTATTTTTCTTGGTGAAAGTATCACCCTTGGAAGTTGTTTAGGAGGGCTATTATTGATTGGAGGTCTCTATAGTGTGCTATGGGCAAAGAGTAAAGAGCAAAAAGCCAATGAAGAACTAAAAGAAGTTGACAAAGATCAAAAAGTCAATGAAGAACTAAAAGAAGTTGACAAAGAATGCAGTTTGCCTATAAGAGAAAATGAGGCAACTGAAAATGATAATCTACCATCTTCCTTGAGTAAAAATGTATGA 1131 36.69 MREKKVYCGLLVRHSIYAVMFILSKAAFDGGMNSFVFVFYRQAIATLFLFPIAFYFEWKTAPPLSFLTFCKIFLLSLIGMSICLNMNGVALIYTSPTLAAATTNCIPVITFLFALLFRVEGLKLKSKTGIAKVGGIVICMGGVMILAFYIGPQLTIFKNHHIIATHNNQHNQHVASSKTWVKGTFLMLTSNIFWGLSLVFQNFVFKSYPSTLLFTSLQCLASSFQSFIVAVALERNFEEWKLGWNVRLLAVAYCGIVATGVTYSLQTWIIKKKGPVFLAMSTPIILVITTLSSAIFLGESITLGSCLGGLLLIGGLYSVLWAKSKEQKANEELKEVDKDQKVNEELKEVDKECSLPIRENEATENDNLPSSLSKNV 376
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 46024336 46042371 + Sed0018047.1 Sed05g3840 716466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g3840 376 Pfam EamA-like transporter family 9 146 IPR000620 GO:0016020(InterPro)
Sed05g3840 376 Pfam EamA-like transporter family 182 320 IPR000620 GO:0016020(InterPro)
Sed05g3840 376 MobiDBLite consensus disorder prediction 354 376 - -
Sed05g3840 376 SUPERFAMILY Multidrug resistance efflux transporter EmrE 240 325 - -
Sed05g3840 376 PANTHER WAT1-RELATED PROTEIN 14 337 IPR030184 GO:0005886(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro)
Sed05g3840 376 MobiDBLite consensus disorder prediction 360 376 - -
Sed05g3840 376 SUPERFAMILY Multidrug resistance efflux transporter EmrE 40 147 - -
Sed05g3840 376 Coils Coil 329 349 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g3840 Sed-Chr5:46024336 Sed10g0481 Sed-Chr10:3062980 2.20E-81 dispersed
Sed05g3837 Sed-Chr5:45994624 Sed05g3840 Sed-Chr5:46024336 4.20E-117 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g3840 - - - 0.0