Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g3866 ATGACTAAGCAAGTCGTGATTCACAACGGCACAGACGATACAATCATCTGCTATGCGCCAACGATGATCACAACAAATGGGGTGTGGCTAGGCGACAACCCTTTGGATTTTTCTCTCCCTCTCTTCATCTTGCAGTTAACAATGGTGGTTGTGATGACTCGCATTTTGGTTTTCCTCTTAAAACCCTTTCGTCAACCTCGAGTCATATCTGAAATTTTGGGTGGAGTGATTTTGGGGCCTTCCGTACTTGGGAGGAATGTTAGATTTGCCAACGCCGTATTCCCTTTAAGAAGTGTAATGGTGCTTGAAACAATGGCAAACGTGGGGCTTCTCTACTTTCTGTTCTTGGTTGGTGTGGAGATGGATATCACAGTAGTTCGTCGAACTGGGAAGAAAGCAATGGCGATAGCTGTAGCAGGAATGGTTCTTCCATTCGGAATAGGAGCTGCTTTTTCATTCCAACTTCACAAAGATAAGGAAATGAACTACGGCGGCACTTATATAATGTTTCTTGGTATTTCGCTCTCTGTGACTGCTTTTCCAGTGCTTGCTAGAATTCTTGCAGAACTTAAACTGATAAATTCAGAGTTCGGAAGGATAGCTATGGCGTCGGCCCTTTTCAATGATATGTGTGCTTGGGTTCTCTTAGCTCTAGCCATAGCATTATCCGAAAATGATTCCACATCTTTGGCTTCTTTATGGATTGTATTGGCAAGTGCAGGCTTTGTTATGTTTTGCATCTTCATTATTAGGCCGATGATGGCATGGATAATTCGAAGAACCCCAGAAGGTGAAAATGTCAGTGAGTTCAACATTTGTTTGATCCTCACAGGGGTTATGATCGCAGGGTTCATTACAGATGCCATAGGAACACATTCCGTTTTTGGGGCTTTCGTGTTCGGGTTGGTTATCCCAAATGGATCACTTGGGGTGGCTTTAATTGAGAAACTTGAGGATTTTGTTTCAGGGCTTTTGCTCCCTCTTTTCTTTGCAATCAGTGGGCTTAAGACTAATATCAGTAGCATAGGACTAATGACTTGGGTATCAATTCTATTCATCACTCTCCTTGCTTTTATTGGCAAAATCATAGGAACACTCTTTGCCTCAATTTGTTATCAAATGACCTATCGCGAAGGTGTCACGTTAGGCTTACTTATGAACACTAAAGGCCTTGTTGAAATGATCATCCTCAACGTTGGAAAGGACCAAAAGGTGTTAGATGATCAATCATTCACAATCATGGTGATTGTAGCTCTAATAATGACAGGAATAATAACACCTGCCGTTACTGTACTCTATAGGCCAATGAGAAGGTTTGTACCGTACAAGAAACGAACAATCCAAACATCAAAACCAGATTCAGAGTTAAGAATATTAGTTTGCATCCACACACCTCGAAATGTGGCAACGATCATCAACCTCCTTGATGCCTCCAACCCAACCAAGAGATCCCCAATTTGCATTTACGTGCTACACTTGGTCGAACTCACAGGCCGAGCCTCGGCCATTCTCATTGTCCATAGCACCAGAAAATCAGGCCGGCCTGCCCTTAATCGAACCCAAGCTCAGTCAGATCACATCATCAATGCATTCGAGAACTACGAACAGAGCGTCGATTGCGTCAGTGTGCAGCCTCTCACAGCAATTTCCCCATACTCCACAATGCACGAAGACATCTGCAATTTAGGCGAAGACAAACACGTGGCCTGCATAATCATCCCATTCCACAAGGAACAAACCGTGGACGGAGGCATGGAAGTGAGTAATCCAGCATTCAGACTGGTTAACCAAAATGTGTTGTACAATGCCCCTTGCTCCGTGGGAATCCTGGTGGATCGAGGCCTGAACAACTCGAAACAAGGGGCGTCTGACTACAGCGTAGTCGTGCTGTTCTTCGGGGGACAGGACGACAGAGAAGCCCTATCGTATGCATGGAGAATGGCAGAGAATCCAGGAGTGAGAGTAAGCGTAATGCGATTCATTGCGGAGGAAGAAGTAGGAGCGAGGGTGGAGGGAACAGAAATGGAGAGTGAGAGGCAAGTTGACGAAGAGTACATAAAGGAATTCAGGACAATGAATGTGAGCAACGAGTCGGTCACATACTCAGAGAAAGTGCTGAACAACGGCGAGGAGACAGTGGCAGCCATAAGATCCATGAACGACGCTCACGACCTGTTCATCGTCGGTAGGGGGGAAGCTCAAATATCGGCTCTCACCGCCGGGCTCACAGACTGGAGCGAATGTCCAGAGCTGGGAGGAATCGGCGATTTGTTAGCTTCGTCGGATTTTGCAGCGACGGCTTCGGTTTTGGTAATGCAACAGTTCGGAACAGTAATGGGTACCGGGCATGGAGAGGAACAAGAAACTTCGCCACATATCCACCAACACCATCCCAGGCAATATCCTTCATCATAG 2415 45.71 MTKQVVIHNGTDDTIICYAPTMITTNGVWLGDNPLDFSLPLFILQLTMVVVMTRILVFLLKPFRQPRVISEILGGVILGPSVLGRNVRFANAVFPLRSVMVLETMANVGLLYFLFLVGVEMDITVVRRTGKKAMAIAVAGMVLPFGIGAAFSFQLHKDKEMNYGGTYIMFLGISLSVTAFPVLARILAELKLINSEFGRIAMASALFNDMCAWVLLALAIALSENDSTSLASLWIVLASAGFVMFCIFIIRPMMAWIIRRTPEGENVSEFNICLILTGVMIAGFITDAIGTHSVFGAFVFGLVIPNGSLGVALIEKLEDFVSGLLLPLFFAISGLKTNISSIGLMTWVSILFITLLAFIGKIIGTLFASICYQMTYREGVTLGLLMNTKGLVEMIILNVGKDQKVLDDQSFTIMVIVALIMTGIITPAVTVLYRPMRRFVPYKKRTIQTSKPDSELRILVCIHTPRNVATIINLLDASNPTKRSPICIYVLHLVELTGRASAILIVHSTRKSGRPALNRTQAQSDHIINAFENYEQSVDCVSVQPLTAISPYSTMHEDICNLGEDKHVACIIIPFHKEQTVDGGMEVSNPAFRLVNQNVLYNAPCSVGILVDRGLNNSKQGASDYSVVVLFFGGQDDREALSYAWRMAENPGVRVSVMRFIAEEEVGARVEGTEMESERQVDEEYIKEFRTMNVSNESVTYSEKVLNNGEETVAAIRSMNDAHDLFIVGRGEAQISALTAGLTDWSECPELGGIGDLLASSDFAATASVLVMQQFGTVMGTGHGEEQETSPHIHQHHPRQYPSS 804
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 46187082 46189804 + Sed0010403.1 Sed05g3866 716492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g3866 804 Gene3D - 41 439 IPR038770 -
Sed05g3866 804 MobiDBLite consensus disorder prediction 780 804 - -
Sed05g3866 804 PANTHER CATION/H + ANTIPORTER 16 775 IPR050794 GO:0006885(PANTHER)|GO:0012505(PANTHER)|GO:0015672(PANTHER)
Sed05g3866 804 Gene3D - 480 743 - -
Sed05g3866 804 FunFam Cation/H(+) antiporter 15 41 440 - -
Sed05g3866 804 Pfam Sodium/hydrogen exchanger family 53 427 IPR006153 GO:0006812(InterPro)|GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:1902600(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1203 Sed-Chr1:8987494 Sed05g3866 Sed-Chr5:46187082 1.40E-136 dispersed
Sed01g4070 Sed-Chr1:69646046 Sed05g3866 Sed-Chr5:46187082 4.80E-94 dispersed
Sed03g3078 Sed-Chr3:47493947 Sed05g3866 Sed-Chr5:46187082 1.80E-179 dispersed
Sed04g2937 Sed-Chr4:40937783 Sed05g3866 Sed-Chr5:46187082 2.90E-134 dispersed
Sed05g3866 Sed-Chr5:46187082 Sed13g0816 Sed-Chr13:6035580 1.90E-199 dispersed
Sed01g0021 Sed-Chr1:332821 Sed05g3866 Sed-Chr5:46187082 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g3866 K26731 - csv:101219265 1310.43