Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g3866 ATGACTAAGCAAGTCGTGATTCACAACGGCACAGACGATACAATCATCTGCTATGCGCCAACGATGATCACAACAAATGGGGTGTGGCTAGGCGACAACCCTTTGGATTTTTCTCTCCCTCTCTTCATCTTGCAGTTAACAATGGTGGTTGTGATGACTCGCATTTTGGTTTTCCTCTTAAAACCCTTTCGTCAACCTCGAGTCATATCTGAAATTTTGGGTGGAGTGATTTTGGGGCCTTCCGTACTTGGGAGGAATGTTAGATTTGCCAACGCCGTATTCCCTTTAAGAAGTGTAATGGTGCTTGAAACAATGGCAAACGTGGGGCTTCTCTACTTTCTGTTCTTGGTTGGTGTGGAGATGGATATCACAGTAGTTCGTCGAACTGGGAAGAAAGCAATGGCGATAGCTGTAGCAGGAATGGTTCTTCCATTCGGAATAGGAGCTGCTTTTTCATTCCAACTTCACAAAGATAAGGAAATGAACTACGGCGGCACTTATATAATGTTTCTTGGTATTTCGCTCTCTGTGACTGCTTTTCCAGTGCTTGCTAGAATTCTTGCAGAACTTAAACTGATAAATTCAGAGTTCGGAAGGATAGCTATGGCGTCGGCCCTTTTCAATGATATGTGTGCTTGGGTTCTCTTAGCTCTAGCCATAGCATTATCCGAAAATGATTCCACATCTTTGGCTTCTTTATGGATTGTATTGGCAAGTGCAGGCTTTGTTATGTTTTGCATCTTCATTATTAGGCCGATGATGGCATGGATAATTCGAAGAACCCCAGAAGGTGAAAATGTCAGTGAGTTCAACATTTGTTTGATCCTCACAGGGGTTATGATCGCAGGGTTCATTACAGATGCCATAGGAACACATTCCGTTTTTGGGGCTTTCGTGTTCGGGTTGGTTATCCCAAATGGATCACTTGGGGTGGCTTTAATTGAGAAACTTGAGGATTTTGTTTCAGGGCTTTTGCTCCCTCTTTTCTTTGCAATCAGTGGGCTTAAGACTAATATCAGTAGCATAGGACTAATGACTTGGGTATCAATTCTATTCATCACTCTCCTTGCTTTTATTGGCAAAATCATAGGAACACTCTTTGCCTCAATTTGTTATCAAATGACCTATCGCGAAGGTGTCACGTTAGGCTTACTTATGAACACTAAAGGCCTTGTTGAAATGATCATCCTCAACGTTGGAAAGGACCAAAAGGTGTTAGATGATCAATCATTCACAATCATGGTGATTGTAGCTCTAATAATGACAGGAATAATAACACCTGCCGTTACTGTACTCTATAGGCCAATGAGAAGGTTTGTACCGTACAAGAAACGAACAATCCAAACATCAAAACCAGATTCAGAGTTAAGAATATTAGTTTGCATCCACACACCTCGAAATGTGGCAACGATCATCAACCTCCTTGATGCCTCCAACCCAACCAAGAGATCCCCAATTTGCATTTACGTGCTACACTTGGTCGAACTCACAGGCCGAGCCTCGGCCATTCTCATTGTCCATAGCACCAGAAAATCAGGCCGGCCTGCCCTTAATCGAACCCAAGCTCAGTCAGATCACATCATCAATGCATTCGAGAACTACGAACAGAGCGTCGATTGCGTCAGTGTGCAGCCTCTCACAGCAATTTCCCCATACTCCACAATGCACGAAGACATCTGCAATTTAGGCGAAGACAAACACGTGGCCTGCATAATCATCCCATTCCACAAGGAACAAACCGTGGACGGAGGCATGGAAGTGAGTAATCCAGCATTCAGACTGGTTAACCAAAATGTGTTGTACAATGCCCCTTGCTCCGTGGGAATCCTGGTGGATCGAGGCCTGAACAACTCGAAACAAGGGGCGTCTGACTACAGCGTAGTCGTGCTGTTCTTCGGGGGACAGGACGACAGAGAAGCCCTATCGTATGCATGGAGAATGGCAGAGAATCCAGGAGTGAGAGTAAGCGTAATGCGATTCATTGCGGAGGAAGAAGTAGGAGCGAGGGTGGAGGGAACAGAAATGGAGAGTGAGAGGCAAGTTGACGAAGAGTACATAAAGGAATTCAGGACAATGAATGTGAGCAACGAGTCGGTCACATACTCAGAGAAAGTGCTGAACAACGGCGAGGAGACAGTGGCAGCCATAAGATCCATGAACGACGCTCACGACCTGTTCATCGTCGGTAGGGGGGAAGCTCAAATATCGGCTCTCACCGCCGGGCTCACAGACTGGAGCGAATGTCCAGAGCTGGGAGGAATCGGCGATTTGTTAGCTTCGTCGGATTTTGCAGCGACGGCTTCGGTTTTGGTAATGCAACAGTTCGGAACAGTAATGGGTACCGGGCATGGAGAGGAACAAGAAACTTCGCCACATATCCACCAACACCATCCCAGGCAATATCCTTCATCATAG 2415 45.71 MTKQVVIHNGTDDTIICYAPTMITTNGVWLGDNPLDFSLPLFILQLTMVVVMTRILVFLLKPFRQPRVISEILGGVILGPSVLGRNVRFANAVFPLRSVMVLETMANVGLLYFLFLVGVEMDITVVRRTGKKAMAIAVAGMVLPFGIGAAFSFQLHKDKEMNYGGTYIMFLGISLSVTAFPVLARILAELKLINSEFGRIAMASALFNDMCAWVLLALAIALSENDSTSLASLWIVLASAGFVMFCIFIIRPMMAWIIRRTPEGENVSEFNICLILTGVMIAGFITDAIGTHSVFGAFVFGLVIPNGSLGVALIEKLEDFVSGLLLPLFFAISGLKTNISSIGLMTWVSILFITLLAFIGKIIGTLFASICYQMTYREGVTLGLLMNTKGLVEMIILNVGKDQKVLDDQSFTIMVIVALIMTGIITPAVTVLYRPMRRFVPYKKRTIQTSKPDSELRILVCIHTPRNVATIINLLDASNPTKRSPICIYVLHLVELTGRASAILIVHSTRKSGRPALNRTQAQSDHIINAFENYEQSVDCVSVQPLTAISPYSTMHEDICNLGEDKHVACIIIPFHKEQTVDGGMEVSNPAFRLVNQNVLYNAPCSVGILVDRGLNNSKQGASDYSVVVLFFGGQDDREALSYAWRMAENPGVRVSVMRFIAEEEVGARVEGTEMESERQVDEEYIKEFRTMNVSNESVTYSEKVLNNGEETVAAIRSMNDAHDLFIVGRGEAQISALTAGLTDWSECPELGGIGDLLASSDFAATASVLVMQQFGTVMGTGHGEEQETSPHIHQHHPRQYPSS 804
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 46187082 46189804 + Sed0010403.1 Sed05g3866 716492

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g3866 804 Gene3D - 41 439 IPR038770 -
Sed05g3866 804 MobiDBLite consensus disorder prediction 780 804 - -
Sed05g3866 804 PANTHER CATION/H + ANTIPORTER 16 775 IPR050794 GO:0006885(PANTHER)|GO:0012505(PANTHER)|GO:0015672(PANTHER)
Sed05g3866 804 Gene3D - 480 743 - -
Sed05g3866 804 FunFam Cation/H(+) antiporter 15 41 440 - -
Sed05g3866 804 Pfam Sodium/hydrogen exchanger family 53 427 IPR006153 GO:0006812(InterPro)|GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:1902600(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g3866 K26731 - - csv:101219265 1310.43
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1203 Sed-Chr1:8987494 Sed05g3866 Sed-Chr5:46187082 1.40E-136 dispersed
Sed01g4070 Sed-Chr1:69646046 Sed05g3866 Sed-Chr5:46187082 4.80E-94 dispersed
Sed03g3078 Sed-Chr3:47493947 Sed05g3866 Sed-Chr5:46187082 1.80E-179 dispersed
Sed04g2937 Sed-Chr4:40937783 Sed05g3866 Sed-Chr5:46187082 2.90E-134 dispersed
Sed05g3866 Sed-Chr5:46187082 Sed13g0816 Sed-Chr13:6035580 1.90E-199 dispersed
Sed01g0021 Sed-Chr1:332821 Sed05g3866 Sed-Chr5:46187082 0.00E+00 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed01g0021 . 11 815 Antiporter Super Family AT2G13620 70.4 0.0e+00 1137.1
Sed05g3866 . 11 799 Antiporter Super Family AT2G13620 69.9 0.0e+00 1101.7
Sed14g0469 . 76 810 Antiporter Super Family AT3G53720 67.9 3.7e-280 961.8
Sed13g0816 . 83 796 Antiporter Super Family AT3G53720 50.3 6.9e-186 648.7
Sed13g0817 . 83 796 Antiporter Super Family AT3G53720 50.3 6.9e-186 648.7
Sed13g0818 . 83 796 Antiporter Super Family AT3G53720 50.3 6.9e-186 648.7
Sed13g0816 . 1 779 Antiporter Super Family AT5G41610 69.3 2.7e-310 1062.0
Sed13g0817 . 1 779 Antiporter Super Family AT5G41610 69.3 2.7e-310 1062.0
Sed13g0818 . 1 779 Antiporter Super Family AT5G41610 69.3 2.7e-310 1062.0
Sed07g1579 . 1 784 Antiporter Super Family AT5G41610 68.1 4.9e-299 1024.6
Sed07g1580 . 3 760 Antiporter Super Family AT5G41610 65.8 1.1e-287 986.9
Sed14g0469 . 8 816 Antiporter Super Family AT5G41610 50.4 1.6e-209 727.2
Sed07g1579 . 10 782 Antiporter Super Family AT4G23700 65.5 2.5e-287 985.7
Sed07g1580 . 3 777 Antiporter Super Family AT4G23700 64.7 9.0e-285 977.2
Sed13g0816 . 9 779 Antiporter Super Family AT4G23700 64.8 3.4e-284 975.3
Sed13g0817 . 9 779 Antiporter Super Family AT4G23700 64.8 3.4e-284 975.3
Sed13g0818 . 9 779 Antiporter Super Family AT4G23700 64.8 3.4e-284 975.3
Sed13g0816 . 3 779 Antiporter Super Family AT3G17630 64.6 6.5e-280 961.1
Sed13g0817 . 3 779 Antiporter Super Family AT3G17630 64.6 6.5e-280 961.1
Sed13g0818 . 3 779 Antiporter Super Family AT3G17630 64.6 6.5e-280 961.1
Sed07g1579 . 4 782 Antiporter Super Family AT3G17630 63.2 8.5e-272 934.1
Sed07g1580 . 3 758 Antiporter Super Family AT3G17630 63.6 9.1e-266 914.1
Sed14g0469 . 2 798 Antiporter Super Family AT3G17630 51.3 1.6e-206 717.2
Sed07g1580 . 3 763 Antiporter Super Family AT1G64170 59.2 6.2e-238 821.6
Sed07g1579 . 15 784 Antiporter Super Family AT1G64170 57.4 1.1e-237 820.8
Sed13g0816 . 1 782 Antiporter Super Family AT1G64170 56.1 1.4e-234 810.4
Sed13g0817 . 1 782 Antiporter Super Family AT1G64170 56.1 1.4e-234 810.4
Sed13g0818 . 1 782 Antiporter Super Family AT1G64170 56.1 1.4e-234 810.4
Sed01g0021 . 11 815 Antiporter Super Family AT2G13620 70.4 0.0e+00 1137.1
Sed05g3866 . 11 799 Antiporter Super Family AT2G13620 69.9 0.0e+00 1101.7
Sed07g1580 . 3 763 Antiporter Super Family AT1G64170 59.2 6.2e-238 821.6
Sed07g1579 . 15 784 Antiporter Super Family AT1G64170 57.4 1.1e-237 820.8
Sed13g0816 . 1 782 Antiporter Super Family AT1G64170 56.1 1.4e-234 810.4
Sed13g0817 . 1 782 Antiporter Super Family AT1G64170 56.1 1.4e-234 810.4
Sed13g0818 . 1 782 Antiporter Super Family AT1G64170 56.1 1.4e-234 810.4
Sed07g1579 . 10 782 Antiporter Super Family AT4G23700 65.5 2.5e-287 985.7
Sed07g1580 . 3 777 Antiporter Super Family AT4G23700 64.7 9.0e-285 977.2
Sed13g0816 . 9 779 Antiporter Super Family AT4G23700 64.8 3.4e-284 975.3
Sed13g0817 . 9 779 Antiporter Super Family AT4G23700 64.8 3.4e-284 975.3
Sed13g0818 . 9 779 Antiporter Super Family AT4G23700 64.8 3.4e-284 975.3
Sed13g0816 . 1 779 Antiporter Super Family AT5G41610 69.3 2.7e-310 1062.0
Sed13g0817 . 1 779 Antiporter Super Family AT5G41610 69.3 2.7e-310 1062.0
Sed13g0818 . 1 779 Antiporter Super Family AT5G41610 69.3 2.7e-310 1062.0
Sed07g1579 . 1 784 Antiporter Super Family AT5G41610 68.1 4.9e-299 1024.6
Sed07g1580 . 3 760 Antiporter Super Family AT5G41610 65.8 1.1e-287 986.9
Sed14g0469 . 8 816 Antiporter Super Family AT5G41610 50.4 1.6e-209 727.2
Sed13g0816 . 3 779 Antiporter Super Family AT3G17630 64.6 6.5e-280 961.1
Sed13g0817 . 3 779 Antiporter Super Family AT3G17630 64.6 6.5e-280 961.1
Sed13g0818 . 3 779 Antiporter Super Family AT3G17630 64.6 6.5e-280 961.1
Sed07g1579 . 4 782 Antiporter Super Family AT3G17630 63.2 8.5e-272 934.1
Sed07g1580 . 3 758 Antiporter Super Family AT3G17630 63.6 9.1e-266 914.1
Sed14g0469 . 2 798 Antiporter Super Family AT3G17630 51.3 1.6e-206 717.2
Sed14g0469 . 76 810 Antiporter Super Family AT3G53720 67.9 3.7e-280 961.8
Sed13g0816 . 83 796 Antiporter Super Family AT3G53720 50.3 6.9e-186 648.7
Sed13g0817 . 83 796 Antiporter Super Family AT3G53720 50.3 6.9e-186 648.7
Sed13g0818 . 83 796 Antiporter Super Family AT3G53720 50.3 6.9e-186 648.7
Sed09g1353 . 47 791 Antiporter Super Family AT3G52080 53.9 3.3e-231 799.3
Sed07g0639 . 30 787 Antiporter Super Family AT3G52080 53.7 1.2e-230 797.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005878 2 1 2 1 2 1 2 1 0 1 1 0 2 1 1 2 0 3 2 2 1 1 1 1 1 1 1 2 1 2 39