Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g3904 ATGTCTTCAATGTTCTATAGATGGAATCCTTTAAGATTGATCATTCAGGGGCTGCTACTGGTCTCATTCTTGAGCTTGAATTGTGCATCCACAGATCCTGATGTGGAAGGAGAAGCTTTGGTTGATTTGCTAGAGGCACTAAATGATTCCAACCATCACATAACTGATTGGAATTATCATTTTGTAAGCCCTTGCTTTAGTTGGTCACATATCACCTGCCGCAATGGAAATGTCATATCCTTGAGCTTGGGTTCAGCAGGATTTTCAGGATCACTTTCTCGTTCTATTACAAAATTAAGATTTTTGGCCAGCTTGGATTTGCAGAGTAATAATATATCAGGTGTTCTGCCAGATTATATAGGAAACATGACCCACCTACAGAATTTGAATCTTGCTAATAATAACTTCAATGGCCCTGTACCTACGGCATGGGGTCAACTTGTTGGTCTAAAAAATCTGGATCTCTCATATAACAACTTAACAGGAGAAGTTCCAGCACAATTATTTTCAATTCCAATGTTCAACTTTTCAGGGACTGGTTTAAATTGTGGCTTTAGGTTGGATAAACCTTGTGTTTCAACCTCTCCCCATCGAGGTTCTGTAAAGAATTCAAAATTTTGGGTAGTGGCTAGTAGTGCAAGTTGTGGGGGGTTCATACTTGTGTCAATTGGTGCCTTCTTTGCTTATAGATGCTTCTATATGCATAAGCTTAAGGATTCTATGTTTGTTGATGTTGCTGGTGAAGATGAGTGTAAACTCTGCTTTGGGCAAATCAGAAGGTTTTCATTGCGGGAAATTCAAGTTGCCACCGACAACTTCAATGAAACAAACATGATCGGGCAAGGAGGGTTTGGAAAAGTATATAAAGGTATCCTGTCAGATGACTGCAAGGTTGCTGTGAAACGATTAACAGACTACAATAGTCCTGGTGGAGAGGCTGCATTCCTAAGAGAAGTTCAACTAATAAGCGTTGCAGTGCACCGAAATCTCCTCCGGTTGATTGGCTTCTGCACAACCACATCTGAGAGAATCCTCGTTTATCCATTCATGCAAAACCTTAGCGTGGCACATCGCTTGAGAGATTTAAAACCTGGAGAGAGAAGCTTGGATTGGGGCACCAGAAAACGGATTGCTTTTGGTGCAGCTCATGGTTTGGAGTACTTGCATGAGCATTGTAATCCTAAGATCATTCATCGTGATCTTAAGGCCGCAAACATCTTATTGGACGATGACTTTGAAGCTGTACTTGGAGATTTTGGTCTTGCCAAGCTAGTGGATACTAAAGTCACTCACATTACCACTCAAGTGCGAGGTACTATGGGCCACATTGCCCCAGAATACCTGTCCACTGGAAAATCGTCTGAAAAGACTGATGTTTTTGGATATGGTATAACTCTTCTCGAACTTGTCACTGGTCAGCGGGCAATCGATTTCTCCCGCCTCGAAGAGGAGGAAGATGTTCTTCTACTTGATCATATAAAGAAGTTGCAGAGGGAGAATAGGCTTGAAGACGTTGTGGACAAAAACTTACAGAATTACCACCAGAAAGAAGTGGAAAACATAGTTCAGGTGGCATTGCTTTGCACTCAAAGTTCGCCAGAGGAGCGGCCAACGATGGCGGAGGTTGTGAATCTACTACATGGAGAAGGGTTGGCAGATAGGTGGGCAGAGTGGATGCACCTTGAAGAGGTAAGAGATCATGAAGTGTCTCTTTTGTGCCACCAATTTGTTTGGGGTGAAGAGTCGAGCCACGATCAAGAAGCCATACAGTTGTCTAAAGCAAGATAG 1788 42.45 MSSMFYRWNPLRLIIQGLLLVSFLSLNCASTDPDVEGEALVDLLEALNDSNHHITDWNYHFVSPCFSWSHITCRNGNVISLSLGSAGFSGSLSRSITKLRFLASLDLQSNNISGVLPDYIGNMTHLQNLNLANNNFNGPVPTAWGQLVGLKNLDLSYNNLTGEVPAQLFSIPMFNFSGTGLNCGFRLDKPCVSTSPHRGSVKNSKFWVVASSASCGGFILVSIGAFFAYRCFYMHKLKDSMFVDVAGEDECKLCFGQIRRFSLREIQVATDNFNETNMIGQGGFGKVYKGILSDDCKVAVKRLTDYNSPGGEAAFLREVQLISVAVHRNLLRLIGFCTTTSERILVYPFMQNLSVAHRLRDLKPGERSLDWGTRKRIAFGAAHGLEYLHEHCNPKIIHRDLKAANILLDDDFEAVLGDFGLAKLVDTKVTHITTQVRGTMGHIAPEYLSTGKSSEKTDVFGYGITLLELVTGQRAIDFSRLEEEEDVLLLDHIKKLQRENRLEDVVDKNLQNYHQKEVENIVQVALLCTQSSPEERPTMAEVVNLLHGEGLADRWAEWMHLEEVRDHEVSLLCHQFVWGEESSHDQEAIQLSKAR 595
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 46454336 46459262 + Sed0003116.2 Sed05g3904 716530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g3904 595 Gene3D Phosphorylase Kinase; domain 1 242 349 - -
Sed05g3904 595 ProSitePatterns Protein kinases ATP-binding region signature. 279 301 IPR017441 GO:0005524(InterPro)
Sed05g3904 595 SMART serkin_6 273 546 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g3904 595 Pfam Protein tyrosine and serine/threonine kinase 276 545 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed05g3904 595 Gene3D Ribonuclease Inhibitor 33 193 IPR032675 -
Sed05g3904 595 FunFam Somatic embryogenesis receptor-like kinase 1 350 566 - -
Sed05g3904 595 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 19 594 - -
Sed05g3904 595 SUPERFAMILY L domain-like 37 172 - -
Sed05g3904 595 ProSitePatterns Serine/Threonine protein kinases active-site signature. 396 408 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed05g3904 595 FunFam Leucine-rich repeat receptor-like kinase 35 145 - -
Sed05g3904 595 Pfam Leucine rich repeat N-terminal domain 36 73 IPR013210 -
Sed05g3904 595 FunFam Somatic embryogenesis receptor kinase 1 242 349 - -
Sed05g3904 595 ProSiteProfiles Protein kinase domain profile. 273 559 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g3904 595 Pfam Leucine rich repeat 102 160 IPR001611 GO:0005515(InterPro)
Sed05g3904 595 Gene3D Transferase(Phosphotransferase) domain 1 350 566 - -
Sed05g3904 595 SUPERFAMILY Protein kinase-like (PK-like) 254 546 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g3904 Sed-Chr5:46454336 Sed05g3906 Sed-Chr5:46456055 1.10E-252 dispersed
Sed05g3903 Sed-Chr5:46454336 Sed05g3904 Sed-Chr5:46454336 0.00E+00 tandem
Sed05g3904 Sed-Chr5:46454336 Sed05g3905 Sed-Chr5:46454336 1.70E-248 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79307 PF00069 Pkinase 2.40E-45 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g3904 - - - 0.0