Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g3905 ATGCCTGATATTAGAGGTACTCCCATGTCTTCAATGTTCTATAGATGGAATCCTTTAAGATTGATCATTCAGGGGCTGCTACTGGTCTCATTCTTGAGCTTGAATTGTGCATCCACAGATCCTGATGTGGAAGGAGAAGCTTTGGTTGATTTGCTAGAGGCACTAAATGATTCCAACCATCACATAACTGATTGGAATTATCATTTTGTAAGCCCTTGCTTTAGTTGGTCACATATCACCTGCCGCAATGGAAATGTCATATCCTTGAGCTTGGGTTCAGCAGGATTTTCAGGATCACTTTCTCGTTCTATTACAAAATTAAGATTTTTGGCCAGCTTGGATTTGCAGAGTAATAATATATCAGGTGTTCTGCCAGATTATATAGGAAACATGACCCACCTACAGAATTTGAATCTTGCTAATAATAACTTCAATGGCCCTGTACCTACGGCATGGGGTCAACTTGTTGGTCTAAAAAATCTGGATCTCTCATATAACAACTTAACAGGAGAAGTTCCAGCACAATTATTTTCAATTCCAATGTTCAACTTTTCAGGGACTGGTTTAAATTGTGGCTTTAGGTTGGATAAACCTTGTGTTTCAACCTCTCCCCATCGAGGTTCTGTAAAGAATTCAAAATTTTGGGTAGTGGCTAGTAGTGCAAGTTGTGGGGGGTTCATACTTGTGTCAATTGGTGCCTTCTTTGCTTATAGATGCTTCTATATGCATAAGCTTAAGGATTCTATGTTTGTTGATGTTGCTGGTGAAGATGAGTGTAAACTCTGCTTTGGGCAAATCAGAAGGTTTTCATTGCGGGAAATTCAAGTTGCCACCGACAACTTCAATGAAACAAACATGATCGGGCAAGGAGGGTTTGGAAAAGTATATAAAGGTATCCTGTCAGATGACTGCAAGGTTGCTGTGAAACGATTAACAGACTACAATAGTCCTGGTGGAGAGGCTGCATTCCTAAGAGAAGTTCAACTAATAAGCGTTGCAGTGCACCGAAATCTCCTCCGGTTGATTGGCTTCTGCACAACCACATCTGAGAGAATCCTCGTTTATCCATTCATGCAAAACCTTAGCGTGGCACATCGCTTGAGAGATTTAAAACCTGGAGAGAGAAGCTTGGATTGGGGCACCAGAAAACGGATTGCTTTTGGTGCAGCTCATGGTTTGGAGTACTTGCATGAGCATTGTAATCCTAAGATCATTCATCGTGATCTTAAGGCCGCAAACATCTTATTGGACGATGACTTTGAAGCTGTACTTGGAGATTTTGGTCTTGCCAAGCTAGTGGATACTAAAGTCACTCACATTACCACTCAAGTGCGAGGTACTATGGGCCACATTGCCCCAGAATACCTGTCCACTGGAAAATCGTCTGAAAAGACTGATGTTTTTGGATATGGTATAACTCTTCTCGAACTTGTCACTGGTCAGCGGGCAATCGATTTCTCCCGCCTCGAAGAGGAGGAAGATGTTCTTCTACTTGATCATGTAAGATGA 1509 41.68 MPDIRGTPMSSMFYRWNPLRLIIQGLLLVSFLSLNCASTDPDVEGEALVDLLEALNDSNHHITDWNYHFVSPCFSWSHITCRNGNVISLSLGSAGFSGSLSRSITKLRFLASLDLQSNNISGVLPDYIGNMTHLQNLNLANNNFNGPVPTAWGQLVGLKNLDLSYNNLTGEVPAQLFSIPMFNFSGTGLNCGFRLDKPCVSTSPHRGSVKNSKFWVVASSASCGGFILVSIGAFFAYRCFYMHKLKDSMFVDVAGEDECKLCFGQIRRFSLREIQVATDNFNETNMIGQGGFGKVYKGILSDDCKVAVKRLTDYNSPGGEAAFLREVQLISVAVHRNLLRLIGFCTTTSERILVYPFMQNLSVAHRLRDLKPGERSLDWGTRKRIAFGAAHGLEYLHEHCNPKIIHRDLKAANILLDDDFEAVLGDFGLAKLVDTKVTHITTQVRGTMGHIAPEYLSTGKSSEKTDVFGYGITLLELVTGQRAIDFSRLEEEEDVLLLDHVR 502
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 46454336 46459262 + Sed0003116.3 Sed05g3905 716531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g3905 502 FunFam Leucine-rich repeat receptor-like kinase 43 155 - -
Sed05g3905 502 Pfam Protein kinase domain 282 484 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g3905 502 FunFam Somatic embryogenesis receptor kinase 1 250 357 - -
Sed05g3905 502 ProSitePatterns Protein kinases ATP-binding region signature. 287 309 IPR017441 GO:0005524(InterPro)
Sed05g3905 502 SUPERFAMILY L domain-like 45 180 - -
Sed05g3905 502 SUPERFAMILY Protein kinase-like (PK-like) 262 489 IPR011009 -
Sed05g3905 502 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 27 502 - -
Sed05g3905 502 Pfam Leucine rich repeat N-terminal domain 44 81 IPR013210 -
Sed05g3905 502 ProSiteProfiles Protein kinase domain profile. 281 502 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g3905 502 Gene3D Transferase(Phosphotransferase) domain 1 358 502 - -
Sed05g3905 502 Gene3D Phosphorylase Kinase; domain 1 250 357 - -
Sed05g3905 502 ProSitePatterns Serine/Threonine protein kinases active-site signature. 404 416 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed05g3905 502 Pfam Leucine rich repeat 110 168 IPR001611 GO:0005515(InterPro)
Sed05g3905 502 SMART serkin_6 281 497 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g3905 502 Gene3D Ribonuclease Inhibitor 41 201 IPR032675 -
Sed05g3905 502 FunFam Somatic embryogenesis receptor-like kinase 1 358 502 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g3903 Sed-Chr5:46454336 Sed05g3905 Sed-Chr5:46454336 6.00E-254 dispersed
Sed05g3905 Sed-Chr5:46454336 Sed07g1764 Sed-Chr7:17989834 1.20E-130 dispersed
Sed05g3904 Sed-Chr5:46454336 Sed05g3905 Sed-Chr5:46454336 1.70E-248 tandem
Sed05g3905 Sed-Chr5:46454336 Sed05g3906 Sed-Chr5:46456055 2.50E-192 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79308 PF00069 Pkinase 4.10E-42 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g3905 - - - 0.0