Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g3906 ATGACCCACCTACAGAATTTGAATCTTGCTAATAATAACTTCAATGGCCCTGTACCTACGGCATGGGGTCAACTTGTTGGTCTAAAAAATCTGGATCTCTCATATAACAACTTAACAGGAGAAGTTCCAGCACAATTATTTTCAATTCCAATGTTCAACTTTTCAGGGACTGGTTTAAATTGTGGCTTTAGGTTGGATAAACCTTGTGTTTCAACCTCTCCCCATCGAGGTTCTGTAAAGAATTCAAAATTTTGGGTAGTGGCTAGTAGTGCAAGTTGTGGGGGGTTCATACTTGTGTCAATTGGTGCCTTCTTTGCTTATAGATGCTTCTATATGCATAAGCTTAAGGATTCTATGTTTGTTGATGTTGCTGGTGAAGATGAGTGTAAACTCTGCTTTGGGCAAATCAGAAGGTTTTCATTGCGGGAAATTCAAGTTGCCACCGACAACTTCAATGAAACAAACATGATCGGGCAAGGAGGGTTTGGAAAAGTATATAAAGGTATCCTGTCAGATGACTGCAAGGTTGCTGTGAAACGATTAACAGACTACAATAGTCCTGGTGGAGAGGCTGCATTCCTAAGAGAAGTTCAACTAATAAGCGTTGCAGTGCACCGAAATCTCCTCCGGTTGATTGGCTTCTGCACAACCACATCTGAGAGAATCCTCGTTTATCCATTCATGCAAAACCTTAGCGTGGCACATCGCTTGAGAGATTTAAAACCTGGAGAGAGAAGCTTGGATTGGGGCACCAGAAAACGGATTGCTTTTGGTGCAGCTCATGGTTTGGAGTACTTGCATGAGCATTGTAATCCTAAGATCATTCATCGTGATCTTAAGGCCGCAAACATCTTATTGGACGATGACTTTGAAGCTGTACTTGGAGATTTTGGTCTTGCCAAGCTAGTGGATACTAAAGTCACTCACATTACCACTCAAGTGCGAGGTACTATGGGCCACATTGCCCCAGAATACCTGTCCACTGGAAAATCGTCTGAAAAGACTGATGTTTTTGGATATGGTATAACTCTTCTCGAACTTGTCACTGGTCAGCGGGCAATCGATTTCTCCCGCCTCGAAGAGGAGGAAGATGTTCTTCTACTTGATCATATAAAGAAGTTGCAGAGGGAGAATAGGCTTGAAGACGTTGTGGACAAAAACTTACAGAATTACCACCAGAAAGAAGTGGAAAACATAGTTCAGGTGGCATTGCTTTGCACTCAAAGTTCGCCAGAGGAGCGGCCAACGATGGCGGAGGTTGTGAATCTACTACATGGAGAAGGGTTGGCAGATAGGTGGGCAGAGTGGATGCACCTTGAAGAGGTAAGAGATCATGAAGTGTCTCTTTTGTGCCACCAATTTGTTTGGGGTGAAGAGTCGAGCCACGATCAAGAAGCCATACAGTTGTCTAAAGCAAGATAG 1422 43.32 MTHLQNLNLANNNFNGPVPTAWGQLVGLKNLDLSYNNLTGEVPAQLFSIPMFNFSGTGLNCGFRLDKPCVSTSPHRGSVKNSKFWVVASSASCGGFILVSIGAFFAYRCFYMHKLKDSMFVDVAGEDECKLCFGQIRRFSLREIQVATDNFNETNMIGQGGFGKVYKGILSDDCKVAVKRLTDYNSPGGEAAFLREVQLISVAVHRNLLRLIGFCTTTSERILVYPFMQNLSVAHRLRDLKPGERSLDWGTRKRIAFGAAHGLEYLHEHCNPKIIHRDLKAANILLDDDFEAVLGDFGLAKLVDTKVTHITTQVRGTMGHIAPEYLSTGKSSEKTDVFGYGITLLELVTGQRAIDFSRLEEEEDVLLLDHIKKLQRENRLEDVVDKNLQNYHQKEVENIVQVALLCTQSSPEERPTMAEVVNLLHGEGLADRWAEWMHLEEVRDHEVSLLCHQFVWGEESSHDQEAIQLSKAR 473
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 46456055 46459262 + Sed0003116.4 Sed05g3906 716532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g3906 473 ProSitePatterns Protein kinases ATP-binding region signature. 157 179 IPR017441 GO:0005524(InterPro)
Sed05g3906 473 Gene3D Ribonuclease Inhibitor 1 77 IPR032675 -
Sed05g3906 473 SUPERFAMILY Protein kinase-like (PK-like) 132 424 IPR011009 -
Sed05g3906 473 FunFam Somatic embryogenesis receptor-like kinase 1 228 444 - -
Sed05g3906 473 SMART serkin_6 151 424 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g3906 473 ProSiteProfiles Protein kinase domain profile. 151 437 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g3906 473 SUPERFAMILY L domain-like 2 48 - -
Sed05g3906 473 Pfam Leucine Rich Repeat 28 46 IPR001611 GO:0005515(InterPro)
Sed05g3906 473 Pfam Leucine Rich Repeat 3 25 IPR001611 GO:0005515(InterPro)
Sed05g3906 473 ProSitePatterns Serine/Threonine protein kinases active-site signature. 274 286 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed05g3906 473 Pfam Protein tyrosine and serine/threonine kinase 154 423 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed05g3906 473 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 1 472 - -
Sed05g3906 473 Gene3D Transferase(Phosphotransferase) domain 1 228 444 - -
Sed05g3906 473 FunFam Somatic embryogenesis receptor kinase 1 120 227 - -
Sed05g3906 473 Gene3D Phosphorylase Kinase; domain 1 120 227 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g3904 Sed-Chr5:46454336 Sed05g3906 Sed-Chr5:46456055 1.10E-252 dispersed
Sed05g3906 Sed-Chr5:46456055 Sed07g1764 Sed-Chr7:17989834 3.70E-158 dispersed
Sed05g3905 Sed-Chr5:46454336 Sed05g3906 Sed-Chr5:46456055 2.50E-192 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79309 PF00069 Pkinase 1.30E-45 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g3906 - - - 0.0