Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g3908 ATGGCGACCACAGCTTGTTTCATCATCGTGAGTAGGAACAACATCCCTATTTATGAAGCTGAAGTCGGATCTGCTGCTAAAAGGGAGGATTCTGCTCAGCTTCATCAGTTTATATTGCACGCGTCCCTTGACATTGTTCAAGACATGGCATGGACTACTAGTGCTATGTTCCTCAAAGCAGTCGATAGGTTCAATGATTTGGTGGTCTCTGTATATGTAACTGCTGGTCATACGCGTTTGATGTTGCTTCATGACTCCCGCAATGATGATGGAATCAAGAGCTTATTTCAAGAGGTTCATGAGCTTTACATAAAGACTATACTTAATCCCCTCTACTTACCTGGATCCCGCATCACTTCTTCGCATTTCGACACAAAAGTCCGTGCACTTGCAAGGAAGTATCTCTAG 408 43.63 MATTACFIIVSRNNIPIYEAEVGSAAKREDSAQLHQFILHASLDIVQDMAWTTSAMFLKAVDRFNDLVVSVYVTAGHTRLMLLHDSRNDDGIKSLFQEVHELYIKTILNPLYLPGSRITSSHFDTKVRALARKYL 135
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 46465031 46475058 + Sed0018246.1 Sed05g3908 716534

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g3908 135 CDD TRAPPC2_sedlin 4 135 - -
Sed05g3908 135 Gene3D - 1 135 - -
Sed05g3908 135 PANTHER TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 2 1 135 IPR006722 GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0006888(PANTHER)|GO:0006888(InterPro)|GO:0030008(PANTHER)
Sed05g3908 135 SUPERFAMILY SNARE-like 1 135 IPR011012 -
Sed05g3908 135 Pfam Sedlin, N-terminal conserved region 9 133 IPR006722 GO:0006888(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g3908 K20301 - - csv:101209636 263.462
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g3908 Sed-Chr5:46465031 Sed05g3910 Sed-Chr5:46465031 1.10E-54 dispersed
Sed05g3908 Sed-Chr5:46465031 Sed05g3909 Sed-Chr5:46465031 1.10E-54 tandem
Sed01g0006 Sed-Chr1:140770 Sed05g3908 Sed-Chr5:46465031 5.10E-27 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g178 . . . . . . . . . Cmo11g01749 . . . . Sed05g3908 Cpe04g00601 . Bhi05g01696 Tan02g0668 Cmetu01g1432 . Hepe02g0416 . . Cla02g00416 Cam02g0426 Cec02g0424 Cco02g0442 Clacu02g0427 Cmu02g0422 Cre02g0756 . . Cone3ag0958 Cone10ag1231 . Csa07g00111 . Cme01g01251 . . . . . . . . . . . Cma11g01369 . . . . . . . . . . . . . . . . . . . Lsi11g01211 . Chy01g00672 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005372 1 1 1 4 1 1 1 1 2 2 1 2 1 1 1 0 1 2 1 0 2 1 1 0 2 1 0 4 1 0 37