Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g0010 ATGAATTATTTTAAAAATTATGCTACAAATATAATACAAGAGGTAGAATATGCCGCTGACGGTAAATTCTCTAATATTAATGTTGATGAAACTTATCATCTGGTGAATGTGGACCAACCGCAATGTCGGATATGCCTTGACACCGAAAAATTAGCTTTGAGGCGAAGATTTAATTGCTTCATGCTACTGCAAAGGCACTCAAATCAAAAGTATGTCCATAGATCATGTCTTGATAATTGGAGGCCCACAAATGATATGGAGGGCTTTGCTTTTGTTCATTCTTCAAAGTGCAAAGCTATGTTTGTGCTACGCGCAAATGTCCTTCCTGATCGCTGGTGGTTGAGACTGAAGTTTCAGTTTCCGTTGCTAGGGACCATGCATTGTGGCATTCTTGGGGTGTTGGTGTACAAGTTCTACGGGGAGGAACCAAGGGAAATGTTTGGTTACGAAGAACACTCCTATGGGTTCTATGCCATGGCTGTCTTGGCTATCATCTTGGTTGGTTTACTATATGGTTTCTTCATAGCGATTATATGCGGGCAGAGGATAAATGAACGCCACTACCATGTCCTTGCTAAGCAAGAATTGACAAAGGAATATATAGTCGAAGATCGTGAACAAAACAAAAATGTTCTTGAACTGGATCCCAGTCATGTTATGGAGCTAAGGATGTTGGGCCTGTATTGA 687 40.61 MNYFKNYATNIIQEVEYAADGKFSNINVDETYHLVNVDQPQCRICLDTEKLALRRRFNCFMLLQRHSNQKYVHRSCLDNWRPTNDMEGFAFVHSSKCKAMFVLRANVLPDRWWLRLKFQFPLLGTMHCGILGVLVYKFYGEEPREMFGYEEHSYGFYAMAVLAIILVGLLYGFFIAIICGQRINERHYHVLAKQELTKEYIVEDREQNKNVLELDPSHVMELRMLGLY 228
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 104718 106349 + Sed0025199.1 Sed06g0010 716553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g0010 228 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 29 165 - -
Sed06g0010 228 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 36 102 IPR013083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1317 Sed-Chr1:9859853 Sed06g0010 Sed-Chr6:104718 6.30E-83 dispersed
Sed01g1318 Sed-Chr1:9859853 Sed06g0010 Sed-Chr6:104718 6.30E-83 dispersed
Sed06g0010 Sed-Chr6:104718 Sed12g2385 Sed-Chr12:33719826 8.10E-10 dispersed
Sed06g0010 Sed-Chr6:104718 Sed14g1078 Sed-Chr14:20290848 1.20E-08 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g0010 - - - 0.0