Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g0018 ATGGAGCCGCCTCACGATGTTTCAGAGACGCCGGAGCAGATTATACTCCGCTGGGACTCCGCCGCGCCGGAGGAACTCAGGGATGACATGCTCTTCGACTCCGACAGGGAAGAGATCGACCGATACTTGCGGGCCGTCGACCAAATCCAGGCCTCCATGTCCTCCGCCTCCTTGTCGGACGATCAGAACAAAGTCGATTCCACTATGCAGATCGCCATGGCCAGGCTCGAGGACGAGTTCCGCCACATTCTGTCCACTCACACCACTCCCATCGAGCTCGACTCGCTCACGGATCCGAGTCCTTCTTCTCGCTCCATGTTGAGTAGTGCCAGTGGCGTATTCGAGGACGACAACGACGCCGAAGAGGCGGATTTGCAGGAACTTCAGCTCGATTTAAGCGGTAGTCCAAGTTTTGGATCAAGTGGACGATCCAGCTATCGGGCGACCAGCAGTATTCGAGAAATTGATCTGATTCCTTCGGATGCGATTCTCGATCTACACAGTATTGCTGAGCGGATGATATTGGCGGGGTACCTGCGCGAGTGCATCCAAGTCTATGGCAGTGTGCGTAAGTCCACCTTCGACTCCAGCTTCAGATTGCTCGGAATTGAGAAACTAAGCATTGGAGACATCCAGAGGCTGGAATGGAAAGAGCTGGAGACGAAGATCAGAAGGTGGATCCGAGCGGCCAAGATTTCCATTAGAACTCTGCTTTCCAGCGAAAAGAAGCTCTGCGAGCAAATCTTTTATGGCATAGGGACCGCCATAGACGATGCTTGCTTCATGGAGACTGTCAAAGGCCCCGTCACTCAGTTGTTCAATTTCGCCGAAGCCATCAGTATAAGCCGCAGATCGCCGGAGAAGCTGTTCAAGATTCTAGACCTCCACGACGCCTTGACGGATTTGATACCGGACATTGATGTAATATTCGAATCCAAATCTGCGGATTATATTCGGGTTCAGGCGGCGGAGATATTGTCGCGGCTGGCGGAGGCCGTGAGAGGGACTTTATCGGAGTTTGAAAACGCGGTGCTGCGAGAGCCGTCGGTGCATCCGGTGCCCGGCGGGACGCTTCATCCGTTGACAAGGTATGTAATGAACTATGTGAGTCTGATTTCCGATTACAAAGTGACCTTAGACGAGCTCATTGTGTCCAAACCATTGACCGGCTCGAGGTACTCGGCCGACCCCACAACTCCAGATATGGATTTCGCCGAGCTAGAGGGCAAAACGCCATTAGCCCTCCACCTGATATGGAGCATCGTGATTCTGCAGTTCAATTTGGAGGGAAAGTCCAGGCACTACAAAGACCCTTCGTTAGCCCATCTCTTTATCATGAACAACGTCCATTACATCGTTCAGAAGATAAAAGGATTCCCAGAATTGCGAGAAATTATCGGAGATGTTCATCTGAGAAGGATGACCGGGAAGTATCGGCAGGCGGCGACAAACTACGAGAGAACAACGTGGGTGAATGTGCTGTATTGTCTGCGAAACGAAGGGTTGAATTTGGGGGGGAGCCTATCTTCCGCCCCCTCAAAGAGTGCTATTAGAGAGAGATTCAAGACTTTCAATGCCATTTTCGAGGAAGTTCACAGGACACAATCGGCATGGTTGATACCAGATTCTCAGCTGAGGGAGGAGCTTCGCATATCCATTACTATGACGTTGATCCCAGCCTACAGGTCGTTTCTTGGCCTCCATGGCCACCGAATTGAGAGTGGAAGGCACCCAGAAAACTACATCAAGTACTCGGTCGAGGAACTCGAAGAATCCATATTGGATTTCTTTGAGGGTTCCTCAGTAACCCAGAACTTGAGAAGGAGATCTCACTGA 1836 51.47 MEPPHDVSETPEQIILRWDSAAPEELRDDMLFDSDREEIDRYLRAVDQIQASMSSASLSDDQNKVDSTMQIAMARLEDEFRHILSTHTTPIELDSLTDPSPSSRSMLSSASGVFEDDNDAEEADLQELQLDLSGSPSFGSSGRSSYRATSSIREIDLIPSDAILDLHSIAERMILAGYLRECIQVYGSVRKSTFDSSFRLLGIEKLSIGDIQRLEWKELETKIRRWIRAAKISIRTLLSSEKKLCEQIFYGIGTAIDDACFMETVKGPVTQLFNFAEAISISRRSPEKLFKILDLHDALTDLIPDIDVIFESKSADYIRVQAAEILSRLAEAVRGTLSEFENAVLREPSVHPVPGGTLHPLTRYVMNYVSLISDYKVTLDELIVSKPLTGSRYSADPTTPDMDFAELEGKTPLALHLIWSIVILQFNLEGKSRHYKDPSLAHLFIMNNVHYIVQKIKGFPELREIIGDVHLRRMTGKYRQAATNYERTTWVNVLYCLRNEGLNLGGSLSSAPSKSAIRERFKTFNAIFEEVHRTQSAWLIPDSQLREELRISITMTLIPAYRSFLGLHGHRIESGRHPENYIKYSVEELEESILDFFEGSSVTQNLRRRSH 611
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 141779 144651 - Sed0014349.1 Sed06g0018 716561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g0018 611 Gene3D Exocyst complex component Exo70 14 607 - -
Sed06g0018 611 MobiDBLite consensus disorder prediction 91 112 - -
Sed06g0018 611 PANTHER EXOCYST COMPLEX PROTEIN EXO70 12 600 IPR004140 GO:0000145(InterPro)|GO:0000145(PANTHER)|GO:0006887(InterPro)|GO:0006887(PANTHER)
Sed06g0018 611 MobiDBLite consensus disorder prediction 1 20 - -
Sed06g0018 611 Pfam Exocyst complex component Exo70 N-terminal 12 85 - -
Sed06g0018 611 Pfam Exo70 exocyst complex subunit C-terminal 225 594 IPR046364 GO:0000145(InterPro)|GO:0005546(InterPro)|GO:0006887(InterPro)
Sed06g0018 611 MobiDBLite consensus disorder prediction 91 118 - -
Sed06g0018 611 SUPERFAMILY Cullin repeat-like 4 598 IPR016159 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2974 Sed-Chr1:27006421 Sed06g0018 Sed-Chr6:141779 4.80E-87 dispersed
Sed03g0894 Sed-Chr3:5548698 Sed06g0018 Sed-Chr6:141779 4.10E-86 dispersed
Sed06g0018 Sed-Chr6:141779 Sed12g2505 Sed-Chr12:34551622 1.00E-120 dispersed
Sed06g0018 Sed-Chr6:141779 Sed06g2306 Sed-Chr6:46432933 6.10E-286 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g0018 K07195 - csv:101204229 1046.96