Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g0034 ATGATGCTTCATTCCGTAGGAGCTGCTAGACAAACTTGTAGCTTACTTGCTGTAACCTGCGGAAGTGTGCATCGAATAAAATGCGAGGAGGATGTTGCCGAGGATAACTTGAAGTACCCCTTTCCAGAATTAGTTTCTTCTGGACGATTGGAGGTTCGGGTTCTAACAAGTCCAAGCAAGGATGAGTTTAGTAGAATTGTGGAATCATGTCAACCAAGCTTCATATACTTGCAAGGGGAACAACTCGAAAATGATGAAATTGGGTCATTGGTTTGGAATGATGTATATTTGTCTCTTGAAGATTTATGTGAACTATTCAACACTGCATTACCAACCACTGTTTATCTAGAAATCCCAAATGGTAGCAGAATAGCAGAGGTTCTTCATTCTAAGGGAATTCCTTATGTTGTGTACTGGAACAACACATTTTCATGTTATGCTGCAGCTCAATTTCGTAATGCATTGCTTTCAGTGCTGCAGAGTTCATCTACTCATACATGGGATGCTTTTCAGCTTGCACATGCTGCTTTTAAGCTTCATTGTGCGGGCAGCAATTATTCCCTTCCCGGGATTTCTGATGACATTATGAGTGATTTAGAGCCTCAGCTTGTTGGGGAACCTCTAAAGATTAACATAGAACCCCCCAAGATAGATGCAGATGAAGAGGAAGATGGTTCTTTAGAAAACCTCCCTGCCATAAGTATACACAATAATGCTGTGACTATGAGATTTCTCATCTGTGGAGTGCCTTGCACACCGGATGCACACTTAATGAAATCGTTGGAGGATGGCCTTAACGCCCTTTTGAACATTGAAATACGTGGGAGTAAACTTCAGGGAAAGTTCAGTGCACCTCCGCCACCTCTTCAAGCAGGATCCTTTTCTCGTGGTGTTGTGACAATGCGATGTGATATAGTGACCTGTAGTTCAGCCCATATCTCAGTTTTGGTGTCTGGTAGTGCTCAAACTTGTTTTGATGATCAGCTGTTGGAGAAACATATCAAACATGAGATTATTGAAAATAGCCAATTAGTTCACGCCATGTATGATTGTGAGGGCAACAAACATCACATGCACGAGCCTCGAAAGTCTGCTTCAGTTGCTTGTGGGGCAACAGTATTTGAGGTTTCCATGAAGGTTCCCGCTTGGGCATCACAGGTCTTAAGGCAACTAGCACCTGATATGTCATATCGGAGTTTAGTTGCACTTGGCATTGGGGGAGCTCAGGGTTTGCCTGTTGCTTCTTTTGAGAAAGAGGATGCCAAGCGGTTGCTCTTCTTCTGTTCAAGAGATGAGAATGATAAACATTCAGATCAGTTACTTGCAAGTGAATTGCCCGGCTGGTTTAAAGTGCCTACTCCTAGTAGAAAGCGGGTGGAACCAAGCCAAGGAACAAGGAGCACTGTTTCACATGACAGTCTTGCATGTGCAAACATCCCTTCCCTTAGAAGATTAGGTAGAGAGGATCCTGCACCAATGAATGGCTTAAAGGCATCTTTACCCTCAGCTAGGAAAAGATTAAAAGTACCCTCCATGAGGCCTATTCCAAGTGTGCATAGGAATAAAATTTCACATTTCTCTGGATTGACCGAAGCAGATGGGAACTATGGAGGCCAATCCAAGGCTAGTTTGCCCATAGTTACCGCGCCAAAGCATGTCACTACAGGATCATCAACTTCTGCAGCACAGAGGAAATCTTTTTCAAACTCATCGCAGTTTAAGCAGCTGATTATTCCCTTAAATCCACTACCTTTAAGGAAACATGGTTGTGGAAGAAACCCGATTCAAGATTGCTCTGAGGAGGAGTTCTTGAAGGATGTTATGGAGTTTTTACTACTTCGAGGACATTCACGACTTATCCCTCAAGGCGGTGTTGAGGAGTTCCCAGAAGCCATACTCAACGGGAAGCGTCTTGACCTCTATAACTTATATAAGGAGGTGGTCACCCGAGGAGGCTTTCATGTCGGCAATGGTATCAATTGGAAGGGGCAGATCTTCTCTAAGATGCACAACTACACAATGACCAATAGAATGACTGGTGTTGGAAATACACTGAAACGACATTACGAGACTTACCTTCTAGAATATGAATTGGCTCACGATGATGTAGATGGAGAATGCTGCCTTTTGTGTCGCAGTAGTGCAGCAGGGGATTGGGTTAACTGTGGTGTTTGTGGTGAATGGGCCCATTTTGGGTGCGATCGGAGGCAGGGTCTCGGTGCATTTAAGGATTATGCCAAAACTGATGGGTTAGAGTATGTTTGTCCACATTGTAGTATTACTACTTACAAGAAAAAGCCACACAAAATAGCAAACGGGCCGGATACATTCATTCAGTTTTAG 2343 43.53 MMLHSVGAARQTCSLLAVTCGSVHRIKCEEDVAEDNLKYPFPELVSSGRLEVRVLTSPSKDEFSRIVESCQPSFIYLQGEQLENDEIGSLVWNDVYLSLEDLCELFNTALPTTVYLEIPNGSRIAEVLHSKGIPYVVYWNNTFSCYAAAQFRNALLSVLQSSSTHTWDAFQLAHAAFKLHCAGSNYSLPGISDDIMSDLEPQLVGEPLKINIEPPKIDADEEEDGSLENLPAISIHNNAVTMRFLICGVPCTPDAHLMKSLEDGLNALLNIEIRGSKLQGKFSAPPPPLQAGSFSRGVVTMRCDIVTCSSAHISVLVSGSAQTCFDDQLLEKHIKHEIIENSQLVHAMYDCEGNKHHMHEPRKSASVACGATVFEVSMKVPAWASQVLRQLAPDMSYRSLVALGIGGAQGLPVASFEKEDAKRLLFFCSRDENDKHSDQLLASELPGWFKVPTPSRKRVEPSQGTRSTVSHDSLACANIPSLRRLGREDPAPMNGLKASLPSARKRLKVPSMRPIPSVHRNKISHFSGLTEADGNYGGQSKASLPIVTAPKHVTTGSSTSAAQRKSFSNSSQFKQLIIPLNPLPLRKHGCGRNPIQDCSEEEFLKDVMEFLLLRGHSRLIPQGGVEEFPEAILNGKRLDLYNLYKEVVTRGGFHVGNGINWKGQIFSKMHNYTMTNRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLLCRSSAAGDWVNCGVCGEWAHFGCDRRQGLGAFKDYAKTDGLEYVCPHCSITTYKKKPHKIANGPDTFIQF 780
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 194837 200169 - Sed0013084.1 Sed06g0034 716577

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g0034 780 Pfam ARID/BRIGHT DNA binding domain 600 697 IPR001606 GO:0003677(InterPro)
Sed06g0034 780 MobiDBLite consensus disorder prediction 458 473 - -
Sed06g0034 780 MobiDBLite consensus disorder prediction 480 499 - -
Sed06g0034 780 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 4 774 IPR042293 -
Sed06g0034 780 SMART ARID_2 594 697 - -
Sed06g0034 780 Gene3D - 592 702 IPR036431 GO:0003677(InterPro)
Sed06g0034 780 MobiDBLite consensus disorder prediction 453 473 - -
Sed06g0034 780 SUPERFAMILY ARID-like 597 711 IPR036431 GO:0003677(InterPro)
Sed06g0034 780 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 703 759 IPR013083 -
Sed06g0034 780 CDD ARID 599 697 - -
Sed06g0034 780 SUPERFAMILY FYVE/PHD zinc finger 693 761 IPR011011 -
Sed06g0034 780 CDD PHD_ARID4_like 707 758 - -
Sed06g0034 780 ProSiteProfiles ARID domain profile. 597 701 IPR001606 GO:0003677(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g0034 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g0034 Sed-Chr6:194837 Sed06g2292 Sed-Chr6:46362607 0.00E+00 dispersed
Sed06g0034 Sed-Chr6:194837 Sed06g2291 Sed-Chr6:46362607 0.00E+00 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed09g0187 . 1 370 ARID Transcription Factor Family AT1G04880 56.9 2.8e-107 386.7
Sed04g2060 . 14 330 ARID Transcription Factor Family AT1G04880 53.8 3.9e-88 323.2
Sed04g2061 . 14 330 ARID Transcription Factor Family AT1G04880 53.8 3.9e-88 323.2
Sed04g2062 . 14 330 ARID Transcription Factor Family AT1G04880 53.8 3.9e-88 323.2
Sed04g2063 . 14 330 ARID Transcription Factor Family AT1G04880 53.8 3.9e-88 323.2
Sed04g1052 . 200 480 ARID Transcription Factor Family AT1G20910 60.6 4.0e-89 326.2
Sed01g2459 . 16 310 ARID Transcription Factor Family AT1G76110 66.3 3.5e-110 396.0
Sed04g1052 . 200 510 ARID Transcription Factor Family AT1G76510 62.0 4.7e-107 386.0
Sed06g2291 . 2 781 ARID Transcription Factor Family AT3G43240 58.4 4.4e-262 901.7
Sed06g2292 . 2 781 ARID Transcription Factor Family AT3G43240 58.4 4.4e-262 901.7
Sed06g2295 . 2 781 ARID Transcription Factor Family AT3G43240 58.4 4.4e-262 901.7
Sed06g2296 . 2 781 ARID Transcription Factor Family AT3G43240 58.4 4.4e-262 901.7
Sed06g2293 . 2 786 ARID Transcription Factor Family AT3G43240 58.0 3.1e-260 895.6
Sed06g2294 . 2 786 ARID Transcription Factor Family AT3G43240 58.0 3.1e-260 895.6
Sed06g0034 . 2 773 ARID Transcription Factor Family AT3G43240 58.1 1.4e-255 880.2
Sed04g2377 . 4 772 ARID Transcription Factor Family AT3G43240 57.4 1.7e-250 863.2
Sed04g2378 . 4 772 ARID Transcription Factor Family AT3G43240 57.4 1.7e-250 863.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001323 3 5 2 2 2 2 3 2 2 2 2 2 2 2 2 3 2 2 2 2 2 2 2 2 2 2 2 9 3 2 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38777 PF01388 ARID 7.10E-14 CL0123 Sed TR