Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g0034 ATGATGCTTCATTCCGTAGGAGCTGCTAGACAAACTTGTAGCTTACTTGCTGTAACCTGCGGAAGTGTGCATCGAATAAAATGCGAGGAGGATGTTGCCGAGGATAACTTGAAGTACCCCTTTCCAGAATTAGTTTCTTCTGGACGATTGGAGGTTCGGGTTCTAACAAGTCCAAGCAAGGATGAGTTTAGTAGAATTGTGGAATCATGTCAACCAAGCTTCATATACTTGCAAGGGGAACAACTCGAAAATGATGAAATTGGGTCATTGGTTTGGAATGATGTATATTTGTCTCTTGAAGATTTATGTGAACTATTCAACACTGCATTACCAACCACTGTTTATCTAGAAATCCCAAATGGTAGCAGAATAGCAGAGGTTCTTCATTCTAAGGGAATTCCTTATGTTGTGTACTGGAACAACACATTTTCATGTTATGCTGCAGCTCAATTTCGTAATGCATTGCTTTCAGTGCTGCAGAGTTCATCTACTCATACATGGGATGCTTTTCAGCTTGCACATGCTGCTTTTAAGCTTCATTGTGCGGGCAGCAATTATTCCCTTCCCGGGATTTCTGATGACATTATGAGTGATTTAGAGCCTCAGCTTGTTGGGGAACCTCTAAAGATTAACATAGAACCCCCCAAGATAGATGCAGATGAAGAGGAAGATGGTTCTTTAGAAAACCTCCCTGCCATAAGTATACACAATAATGCTGTGACTATGAGATTTCTCATCTGTGGAGTGCCTTGCACACCGGATGCACACTTAATGAAATCGTTGGAGGATGGCCTTAACGCCCTTTTGAACATTGAAATACGTGGGAGTAAACTTCAGGGAAAGTTCAGTGCACCTCCGCCACCTCTTCAAGCAGGATCCTTTTCTCGTGGTGTTGTGACAATGCGATGTGATATAGTGACCTGTAGTTCAGCCCATATCTCAGTTTTGGTGTCTGGTAGTGCTCAAACTTGTTTTGATGATCAGCTGTTGGAGAAACATATCAAACATGAGATTATTGAAAATAGCCAATTAGTTCACGCCATGTATGATTGTGAGGGCAACAAACATCACATGCACGAGCCTCGAAAGTCTGCTTCAGTTGCTTGTGGGGCAACAGTATTTGAGGTTTCCATGAAGGTTCCCGCTTGGGCATCACAGGTCTTAAGGCAACTAGCACCTGATATGTCATATCGGAGTTTAGTTGCACTTGGCATTGGGGGAGCTCAGGGTTTGCCTGTTGCTTCTTTTGAGAAAGAGGATGCCAAGCGGTTGCTCTTCTTCTGTTCAAGAGATGAGAATGATAAACATTCAGATCAGTTACTTGCAAGTGAATTGCCCGGCTGGTTTAAAGTGCCTACTCCTAGTAGAAAGCGGGTGGAACCAAGCCAAGGAACAAGGAGCACTGTTTCACATGACAGTCTTGCATGTGCAAACATCCCTTCCCTTAGAAGATTAGGTAGAGAGGATCCTGCACCAATGAATGGCTTAAAGGCATCTTTACCCTCAGCTAGGAAAAGATTAAAAGTACCCTCCATGAGGCCTATTCCAAGTGTGCATAGGAATAAAATTTCACATTTCTCTGGATTGACCGAAGCAGATGGGAACTATGGAGGCCAATCCAAGGCTAGTTTGCCCATAGTTACCGCGCCAAAGCATGTCACTACAGGATCATCAACTTCTGCAGCACAGAGGAAATCTTTTTCAAACTCATCGCAGTTTAAGCAGCTGATTATTCCCTTAAATCCACTACCTTTAAGGAAACATGGTTGTGGAAGAAACCCGATTCAAGATTGCTCTGAGGAGGAGTTCTTGAAGGATGTTATGGAGTTTTTACTACTTCGAGGACATTCACGACTTATCCCTCAAGGCGGTGTTGAGGAGTTCCCAGAAGCCATACTCAACGGGAAGCGTCTTGACCTCTATAACTTATATAAGGAGGTGGTCACCCGAGGAGGCTTTCATGTCGGCAATGGTATCAATTGGAAGGGGCAGATCTTCTCTAAGATGCACAACTACACAATGACCAATAGAATGACTGGTGTTGGAAATACACTGAAACGACATTACGAGACTTACCTTCTAGAATATGAATTGGCTCACGATGATGTAGATGGAGAATGCTGCCTTTTGTGTCGCAGTAGTGCAGCAGGGGATTGGGTTAACTGTGGTGTTTGTGGTGAATGGGCCCATTTTGGGTGCGATCGGAGGCAGGGTCTCGGTGCATTTAAGGATTATGCCAAAACTGATGGGTTAGAGTATGTTTGTCCACATTGTAGTATTACTACTTACAAGAAAAAGCCACACAAAATAGCAAACGGGCCGGATACATTCATTCAGTTTTAG 2343 43.53 MMLHSVGAARQTCSLLAVTCGSVHRIKCEEDVAEDNLKYPFPELVSSGRLEVRVLTSPSKDEFSRIVESCQPSFIYLQGEQLENDEIGSLVWNDVYLSLEDLCELFNTALPTTVYLEIPNGSRIAEVLHSKGIPYVVYWNNTFSCYAAAQFRNALLSVLQSSSTHTWDAFQLAHAAFKLHCAGSNYSLPGISDDIMSDLEPQLVGEPLKINIEPPKIDADEEEDGSLENLPAISIHNNAVTMRFLICGVPCTPDAHLMKSLEDGLNALLNIEIRGSKLQGKFSAPPPPLQAGSFSRGVVTMRCDIVTCSSAHISVLVSGSAQTCFDDQLLEKHIKHEIIENSQLVHAMYDCEGNKHHMHEPRKSASVACGATVFEVSMKVPAWASQVLRQLAPDMSYRSLVALGIGGAQGLPVASFEKEDAKRLLFFCSRDENDKHSDQLLASELPGWFKVPTPSRKRVEPSQGTRSTVSHDSLACANIPSLRRLGREDPAPMNGLKASLPSARKRLKVPSMRPIPSVHRNKISHFSGLTEADGNYGGQSKASLPIVTAPKHVTTGSSTSAAQRKSFSNSSQFKQLIIPLNPLPLRKHGCGRNPIQDCSEEEFLKDVMEFLLLRGHSRLIPQGGVEEFPEAILNGKRLDLYNLYKEVVTRGGFHVGNGINWKGQIFSKMHNYTMTNRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLLCRSSAAGDWVNCGVCGEWAHFGCDRRQGLGAFKDYAKTDGLEYVCPHCSITTYKKKPHKIANGPDTFIQF 780
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 194837 200169 - Sed0013084.1 Sed06g0034 716577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g0034 780 Pfam ARID/BRIGHT DNA binding domain 600 697 IPR001606 GO:0003677(InterPro)
Sed06g0034 780 MobiDBLite consensus disorder prediction 458 473 - -
Sed06g0034 780 MobiDBLite consensus disorder prediction 480 499 - -
Sed06g0034 780 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 4 774 IPR042293 -
Sed06g0034 780 SMART ARID_2 594 697 - -
Sed06g0034 780 Gene3D - 592 702 IPR036431 GO:0003677(InterPro)
Sed06g0034 780 MobiDBLite consensus disorder prediction 453 473 - -
Sed06g0034 780 SUPERFAMILY ARID-like 597 711 IPR036431 GO:0003677(InterPro)
Sed06g0034 780 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 703 759 IPR013083 -
Sed06g0034 780 CDD ARID 599 697 - -
Sed06g0034 780 SUPERFAMILY FYVE/PHD zinc finger 693 761 IPR011011 -
Sed06g0034 780 CDD PHD_ARID4_like 707 758 - -
Sed06g0034 780 ProSiteProfiles ARID domain profile. 597 701 IPR001606 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g0034 Sed-Chr6:194837 Sed06g2292 Sed-Chr6:46362607 0.00E+00 dispersed
Sed06g0034 Sed-Chr6:194837 Sed06g2291 Sed-Chr6:46362607 0.00E+00 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38777 PF01388 ARID 7.10E-14 CL0123 Sed TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g0034 - - - 0.0