Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g0037 ATGGATTCCGTCAATTCTTTCAAGGGCTACGGCAAGGTGGACGAGCTCGAACAGCAATCTTTCCGCCGGAATACTCGCCGCCGATTCATTGTACTCATCCTCTCAGTCGTTATTCTGATTGCCGTTATCATCGGCGCCGTCGTTGGAATCGCGGTTCATAAACGAAGCACTTCGTCTTCGTCGGCTCCTCCTCCTCCGACGGCAGCGGAGCTCACTCCGGCGGCCTCACTGAAAACACTCTGCAGTGTCACTCTGTATCCGAGTTCGTGCGAGTCCTCTCTCGGAAACTCCAACACCACCGATCCAGTCTCCCTCTTCAAGCTTTCCCTCCGAGTCGCCGCCGATTCGCTCTCGAAACTCGCCGATTACACCGCCAAACTCAAATCCAGCGCCGCCGATCCGAATCTCCGAGCCGCAATCGGGATCTGCGGTTCTGTTTTGGAAGACGCGATCGAGACGCTAAACGACACCGTTTCGGCATCGCCGTCGAGGATTGAAGATCTGAAAACCTGGCTGAGCACCGCCGTGACCGATCAAGAAACCTGCCTGGACGCGGTTCGGGATCTGAATGAGACGGCGATTCTGGAGGAATTGGAATCGGCGATGGCGAATTCGACCGAGTTCACCAGCAATAGTTTAGCGATTGCGGCCAACATCCTGGGGCTGTTGTCCGACTTCGAGGTCCCAATCCTCCACCGGAGGCTGATGGAATTTCCGGAGTGGGTGAGCTCCGGCGACCGGAGGGTTCTTGAGGGGAAGAATGCGACGGCGGCGCGTGTGACGGTGTCGAAGGATGGGACAGGGGATTTCAGGACGATCAGTGAGGCGGTAGCGGCGGTGCCGGAGAAGAGTAAAGAGAGATTTGTAATATACGTAAAAAAAGGAATATATGAAGAGAATGTGATTTTGGATAAGAGCAAGTGGAACGTTATGATGTACGGTGATGGCAGAACCAAAACCATTGTTTCCGGCGGCCTCAACTTCGTCGACGGCACGCCCACCTTCGCCACCGCCACTTTCGCTGTGGCTGGCAAAGGCTTCATCGGCAAGGACATGGGCTTCGTCAACACCGCCGGCCCAGCCAAGCACCAAGCCGTGGCCTTCCGATCTGGCTCTGACTTCTCCGTGATGCACGGATGCTCATTCGATGGCTACCAGGACACGCTCTACGCACATTCCAACCGTCAATTCTACCGCGACTGCGACATCTCTGGAACCATCGACTTCATGTTCGGCAGCGCCGCGGTAGTGTTCCAAAACTGCAATATCCGTGCGAGGCAGCCCCTTCCCAATCAGTTCAACACCATCACAGCCCAAGGGAAAAAAGACATGAACCAAAACTCGGGCATTTCCATTCAGAGATGCATATTTTCAGCGTACAACGACACAGTCTCTGCCCCTACCTTCTTGGGCCGCCCATGGAAGGAATATTCCACCACTGTGATTATGCAGTCGGAGATTGGCGGTTTGGTTGAGCCGGTGGGTTGGAAGGAGTGGGTCAGCGGGCAGGACCCGCCCAATACTATCTTTTACGGGGAGTATCGAAATAGTGGGTCAGGATCCATCGTGGATAAGAGGGTCAAATGGGTTGGTTATAGGCCTAAGCTTAGTGACGCTGATGCTGAGAAGTTCACCGTTCGGACCTTTCTCAACGGCCAGGATTGGTTGCCGCCCACCAATGTCAAATTTGATACCTCCTTATGA 1704 54.58 MDSVNSFKGYGKVDELEQQSFRRNTRRRFIVLILSVVILIAVIIGAVVGIAVHKRSTSSSSAPPPPTAAELTPAASLKTLCSVTLYPSSCESSLGNSNTTDPVSLFKLSLRVAADSLSKLADYTAKLKSSAADPNLRAAIGICGSVLEDAIETLNDTVSASPSRIEDLKTWLSTAVTDQETCLDAVRDLNETAILEELESAMANSTEFTSNSLAIAANILGLLSDFEVPILHRRLMEFPEWVSSGDRRVLEGKNATAARVTVSKDGTGDFRTISEAVAAVPEKSKERFVIYVKKGIYEENVILDKSKWNVMMYGDGRTKTIVSGGLNFVDGTPTFATATFAVAGKGFIGKDMGFVNTAGPAKHQAVAFRSGSDFSVMHGCSFDGYQDTLYAHSNRQFYRDCDISGTIDFMFGSAAVVFQNCNIRARQPLPNQFNTITAQGKKDMNQNSGISIQRCIFSAYNDTVSAPTFLGRPWKEYSTTVIMQSEIGGLVEPVGWKEWVSGQDPPNTIFYGEYRNSGSGSIVDKRVKWVGYRPKLSDADAEKFTVRTFLNGQDWLPPTNVKFDTSL 567
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 219585 222748 - Sed0014519.1 Sed06g0037 716580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g0037 567 Gene3D Invertase/pectin methylesterase inhibitor family protein 73 219 IPR035513 -
Sed06g0037 567 Pfam Plant invertase/pectin methylesterase inhibitor 76 215 IPR006501 GO:0004857(InterPro)
Sed06g0037 567 FunFam Pectinesterase 253 567 - -
Sed06g0037 567 SUPERFAMILY Pectin lyase-like 255 564 IPR011050 -
Sed06g0037 567 Pfam Pectinesterase 260 552 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Sed06g0037 567 NCBIfam pectinesterase inhibitor domain 70 218 IPR006501 GO:0004857(InterPro)
Sed06g0037 567 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 77 219 IPR035513 -
Sed06g0037 567 SMART PMEI_2 72 215 IPR006501 GO:0004857(InterPro)
Sed06g0037 567 FunFam Pectinesterase 73 220 - -
Sed06g0037 567 PANTHER PECTINESTERASE 30 558 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Sed06g0037 567 CDD PMEI-like_3 79 219 - -
Sed06g0037 567 Gene3D - 253 567 IPR012334 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1879 Sed-Chr1:13924973 Sed06g0037 Sed-Chr6:219585 3.80E-125 dispersed
Sed06g0037 Sed-Chr6:219585 Sed08g2620 Sed-Chr8:38465075 1.40E-119 dispersed
Sed06g0037 Sed-Chr6:219585 Sed06g0038 Sed-Chr6:224580 1.40E-106 tandem
Sed04g1778 Sed-Chr4:32417976 Sed06g0037 Sed-Chr6:219585 3.90E-114 wgd
Sed06g0037 Sed-Chr6:219585 Sed06g2286 Sed-Chr6:46340802 6.50E-250 wgd
Sed06g0037 Sed-Chr6:219585 Sed09g1726 Sed-Chr9:40469150 3.10E-103 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g0037 - - - 0.0