Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g0038 ATGATGAGATTAGAAGTTGGTATTGATGGCGAAACCAACCAGCAGCCTACGGATGCGTTTATTTATAACCCACCAAAAAAGTCACCCACCACACGTTACACACAACATCTCCGGTCTTCCCCAACCAAGACCAAAATGGATCGCCCAAGGCTGTTCCTTGTCTTAGCCCTGGGGGCCGCGACGCTGCTCCTCGTCCCGGTCGCCTCGGATGAGAGGGCGGTGAGGAGCACGTGCGCGGTCACGCTGTACCCAGAGCTGTGCCACGCGGTGGGAACGAGCTCGCAGAAGGGGGCGTGGAGTGCAAAGGAGTTGGTTGAAGCGGCCGTGAATGCGAGCATTGGGACAGTGAAGCGGAACTACAAGAGCATAAAGGAGTTGGTCGAGACGATGGGGAACTTGACGAAGCGTCAGAGAGTTGCGCTGAATGACTGCTTGGAAGTGGAAGAGGAGGCGCTGAGAGAGCTGTATGAGGTTGTGGAAGATCTTAATCAGTATCCCAACAACAAAGCTGTGTCGCAGTACGCCGATGACCTTAAGACTTTGCTCAGTTCCGCCATTACCAATCAGGAGACGTGTCTGGACGGATTCTCCCACGACAAAGGCGACAAAGCAGTTCGAAAGTCATTAGAAGCAGGACAAGTCCACGTGGAGAAACTGTGCAGCATCGCATTAGCGCTCGTCAAAAACCTCACCGACACCGAAATCGCCCATCGGAGCCACCTCAGCAGAAAGCGGCTCACGGCGGTTAACTGGCCGGACTGGCTGTCCGCCGGTGACCGGAGGCTTATGCAAGCGTCGTCCTCGGCAACCCCGGACGCGGTGGTGGCGGCTGACGGGAGCGGGGATTTTCGGACGGTGGCGGCGGCGGTGGCGGCGGCGCCGGAGAGGAGTAGCCGGAGATATATAATAAGAATAAAGGCTGGGGTTTATAGGGAGAATGTGAACGTGGGGAGTAGTAAGAGAAATATAATGTTTTGGGGAGATGGAAGGACCACTACCATTATCACCGGCAGTAGAAATGTCGTCGACGGCAGCACCACCTTTAACTCCGCCACCGTGGCGGCCGTGGGAGAAAGATTCTTAGCTCGAGACATAACCTTTCAGAACACTGCCGGTCCATCAAAGCACCAAGCAGTGGCTCTCCGGGTGGGCTCCGACCTCTCCGCCTTCTACCGCTGCGAAATGCTCGCCTATCAAGACACCCTCTACGTCCACTCCAACCGTCAATTCTACGTCGGCTGCATCATCGTAGGCTCCGTCGACTTCATATTCGGCAATGCCGCTGCCGTCATCCAAAACTCCGACATCCACGCCCGCCGCCCCAACCCGGGTCAGAAAAACATGGTCACTGCACAGGGAAGAACCGACCCGAATCAGAACACCGGCATCGTCATCCAGAAATGCCGAATCGGAGCCACCTCCGACCTCCAGCCGGTGATCAGAAACTTCCCCACGTTCCTCGGCCGGCCGTGGCAGAGATACTCGAGGACGGTGGTTATGCAATCGAGCATCAGCAATGTGGTTGATCCGGCGGGGTGGCATGTTTGGGATGGCAATTTTGCGCTTCACACTCTGTTTTATGCAGAGTATCAGAATAGTGGGCCCGGTGCTGATACATCCCGGAGAGTGACGTGGAAGGGCTACAGGGTTGTTACCGGTGCGGCGGAAGCCCAGCAATTCACCGCCGGGAATTTCATCGGCGGCGGCACCTGGTTGAGCTCCACCGGATTCCCGTTTTCACTTGGGTTGTAA 1752 56.34 MMRLEVGIDGETNQQPTDAFIYNPPKKSPTTRYTQHLRSSPTKTKMDRPRLFLVLALGAATLLLVPVASDERAVRSTCAVTLYPELCHAVGTSSQKGAWSAKELVEAAVNASIGTVKRNYKSIKELVETMGNLTKRQRVALNDCLEVEEEALRELYEVVEDLNQYPNNKAVSQYADDLKTLLSSAITNQETCLDGFSHDKGDKAVRKSLEAGQVHVEKLCSIALALVKNLTDTEIAHRSHLSRKRLTAVNWPDWLSAGDRRLMQASSSATPDAVVAADGSGDFRTVAAAVAAAPERSSRRYIIRIKAGVYRENVNVGSSKRNIMFWGDGRTTTIITGSRNVVDGSTTFNSATVAAVGERFLARDITFQNTAGPSKHQAVALRVGSDLSAFYRCEMLAYQDTLYVHSNRQFYVGCIIVGSVDFIFGNAAAVIQNSDIHARRPNPGQKNMVTAQGRTDPNQNTGIVIQKCRIGATSDLQPVIRNFPTFLGRPWQRYSRTVVMQSSISNVVDPAGWHVWDGNFALHTLFYAEYQNSGPGADTSRRVTWKGYRVVTGAAEAQQFTAGNFIGGGTWLSSTGFPFSLGL 583
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 224580 228743 - Sed0007941.1 Sed06g0038 716581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g0038 583 Pfam Plant invertase/pectin methylesterase inhibitor 73 226 IPR006501 GO:0004857(InterPro)
Sed06g0038 583 FunFam Pectinesterase 70 231 - -
Sed06g0038 583 FunFam Pectinesterase 266 583 - -
Sed06g0038 583 ProSitePatterns Pectinesterase signature 1. 297 316 IPR018040 -
Sed06g0038 583 CDD PMEI-like_3 76 231 - -
Sed06g0038 583 NCBIfam pectinesterase inhibitor domain 55 231 IPR006501 GO:0004857(InterPro)
Sed06g0038 583 Gene3D Invertase/pectin methylesterase inhibitor family protein 68 232 IPR035513 -
Sed06g0038 583 Pfam Pectinesterase 272 568 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Sed06g0038 583 SUPERFAMILY Pectin lyase-like 268 582 IPR011050 -
Sed06g0038 583 Coils Coil 145 165 - -
Sed06g0038 583 SMART PMEI_2 69 226 IPR006501 GO:0004857(InterPro)
Sed06g0038 583 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 73 231 IPR035513 -
Sed06g0038 583 ProSitePatterns Pectinesterase signature 2. 416 425 IPR033131 -
Sed06g0038 583 PANTHER PECTINESTERASE 59 574 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Sed06g0038 583 Gene3D - 266 583 IPR012334 -
Sed06g0038 583 MobiDBLite consensus disorder prediction 15 43 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g2368 Sed-Chr4:37098954 Sed06g0038 Sed-Chr6:224580 1.90E-204 dispersed
Sed06g0038 Sed-Chr6:224580 Sed09g1726 Sed-Chr9:40469150 1.20E-195 dispersed
Sed06g0037 Sed-Chr6:219585 Sed06g0038 Sed-Chr6:224580 1.40E-106 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g0038 K01051 - csv:101207996 834.713