Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed06g0038 | ATGATGAGATTAGAAGTTGGTATTGATGGCGAAACCAACCAGCAGCCTACGGATGCGTTTATTTATAACCCACCAAAAAAGTCACCCACCACACGTTACACACAACATCTCCGGTCTTCCCCAACCAAGACCAAAATGGATCGCCCAAGGCTGTTCCTTGTCTTAGCCCTGGGGGCCGCGACGCTGCTCCTCGTCCCGGTCGCCTCGGATGAGAGGGCGGTGAGGAGCACGTGCGCGGTCACGCTGTACCCAGAGCTGTGCCACGCGGTGGGAACGAGCTCGCAGAAGGGGGCGTGGAGTGCAAAGGAGTTGGTTGAAGCGGCCGTGAATGCGAGCATTGGGACAGTGAAGCGGAACTACAAGAGCATAAAGGAGTTGGTCGAGACGATGGGGAACTTGACGAAGCGTCAGAGAGTTGCGCTGAATGACTGCTTGGAAGTGGAAGAGGAGGCGCTGAGAGAGCTGTATGAGGTTGTGGAAGATCTTAATCAGTATCCCAACAACAAAGCTGTGTCGCAGTACGCCGATGACCTTAAGACTTTGCTCAGTTCCGCCATTACCAATCAGGAGACGTGTCTGGACGGATTCTCCCACGACAAAGGCGACAAAGCAGTTCGAAAGTCATTAGAAGCAGGACAAGTCCACGTGGAGAAACTGTGCAGCATCGCATTAGCGCTCGTCAAAAACCTCACCGACACCGAAATCGCCCATCGGAGCCACCTCAGCAGAAAGCGGCTCACGGCGGTTAACTGGCCGGACTGGCTGTCCGCCGGTGACCGGAGGCTTATGCAAGCGTCGTCCTCGGCAACCCCGGACGCGGTGGTGGCGGCTGACGGGAGCGGGGATTTTCGGACGGTGGCGGCGGCGGTGGCGGCGGCGCCGGAGAGGAGTAGCCGGAGATATATAATAAGAATAAAGGCTGGGGTTTATAGGGAGAATGTGAACGTGGGGAGTAGTAAGAGAAATATAATGTTTTGGGGAGATGGAAGGACCACTACCATTATCACCGGCAGTAGAAATGTCGTCGACGGCAGCACCACCTTTAACTCCGCCACCGTGGCGGCCGTGGGAGAAAGATTCTTAGCTCGAGACATAACCTTTCAGAACACTGCCGGTCCATCAAAGCACCAAGCAGTGGCTCTCCGGGTGGGCTCCGACCTCTCCGCCTTCTACCGCTGCGAAATGCTCGCCTATCAAGACACCCTCTACGTCCACTCCAACCGTCAATTCTACGTCGGCTGCATCATCGTAGGCTCCGTCGACTTCATATTCGGCAATGCCGCTGCCGTCATCCAAAACTCCGACATCCACGCCCGCCGCCCCAACCCGGGTCAGAAAAACATGGTCACTGCACAGGGAAGAACCGACCCGAATCAGAACACCGGCATCGTCATCCAGAAATGCCGAATCGGAGCCACCTCCGACCTCCAGCCGGTGATCAGAAACTTCCCCACGTTCCTCGGCCGGCCGTGGCAGAGATACTCGAGGACGGTGGTTATGCAATCGAGCATCAGCAATGTGGTTGATCCGGCGGGGTGGCATGTTTGGGATGGCAATTTTGCGCTTCACACTCTGTTTTATGCAGAGTATCAGAATAGTGGGCCCGGTGCTGATACATCCCGGAGAGTGACGTGGAAGGGCTACAGGGTTGTTACCGGTGCGGCGGAAGCCCAGCAATTCACCGCCGGGAATTTCATCGGCGGCGGCACCTGGTTGAGCTCCACCGGATTCCCGTTTTCACTTGGGTTGTAA | 1752 | 56.34 | MMRLEVGIDGETNQQPTDAFIYNPPKKSPTTRYTQHLRSSPTKTKMDRPRLFLVLALGAATLLLVPVASDERAVRSTCAVTLYPELCHAVGTSSQKGAWSAKELVEAAVNASIGTVKRNYKSIKELVETMGNLTKRQRVALNDCLEVEEEALRELYEVVEDLNQYPNNKAVSQYADDLKTLLSSAITNQETCLDGFSHDKGDKAVRKSLEAGQVHVEKLCSIALALVKNLTDTEIAHRSHLSRKRLTAVNWPDWLSAGDRRLMQASSSATPDAVVAADGSGDFRTVAAAVAAAPERSSRRYIIRIKAGVYRENVNVGSSKRNIMFWGDGRTTTIITGSRNVVDGSTTFNSATVAAVGERFLARDITFQNTAGPSKHQAVALRVGSDLSAFYRCEMLAYQDTLYVHSNRQFYVGCIIVGSVDFIFGNAAAVIQNSDIHARRPNPGQKNMVTAQGRTDPNQNTGIVIQKCRIGATSDLQPVIRNFPTFLGRPWQRYSRTVVMQSSISNVVDPAGWHVWDGNFALHTLFYAEYQNSGPGADTSRRVTWKGYRVVTGAAEAQQFTAGNFIGGGTWLSSTGFPFSLGL | 583 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 224580 | 228743 | - | Sed0007941.1 | Sed06g0038 | 716581 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed06g0038 | 583 | Pfam | Plant invertase/pectin methylesterase inhibitor | 73 | 226 | IPR006501 | GO:0004857(InterPro) | |
Sed06g0038 | 583 | FunFam | Pectinesterase | 70 | 231 | - | - | |
Sed06g0038 | 583 | FunFam | Pectinesterase | 266 | 583 | - | - | |
Sed06g0038 | 583 | ProSitePatterns | Pectinesterase signature 1. | 297 | 316 | IPR018040 | - | |
Sed06g0038 | 583 | CDD | PMEI-like_3 | 76 | 231 | - | - | |
Sed06g0038 | 583 | NCBIfam | pectinesterase inhibitor domain | 55 | 231 | IPR006501 | GO:0004857(InterPro) | |
Sed06g0038 | 583 | Gene3D | Invertase/pectin methylesterase inhibitor family protein | 68 | 232 | IPR035513 | - | |
Sed06g0038 | 583 | Pfam | Pectinesterase | 272 | 568 | IPR000070 | GO:0030599(InterPro)|GO:0042545(InterPro) | |
Sed06g0038 | 583 | SUPERFAMILY | Pectin lyase-like | 268 | 582 | IPR011050 | - | |
Sed06g0038 | 583 | Coils | Coil | 145 | 165 | - | - | |
Sed06g0038 | 583 | SMART | PMEI_2 | 69 | 226 | IPR006501 | GO:0004857(InterPro) | |
Sed06g0038 | 583 | SUPERFAMILY | Plant invertase/pectin methylesterase inhibitor | 73 | 231 | IPR035513 | - | |
Sed06g0038 | 583 | ProSitePatterns | Pectinesterase signature 2. | 416 | 425 | IPR033131 | - | |
Sed06g0038 | 583 | PANTHER | PECTINESTERASE | 59 | 574 | - | GO:0030599(PANTHER)|GO:0046910(PANTHER) | |
Sed06g0038 | 583 | Gene3D | - | 266 | 583 | IPR012334 | - | |
Sed06g0038 | 583 | MobiDBLite | consensus disorder prediction | 15 | 43 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed04g2368 | Sed-Chr4:37098954 | Sed06g0038 | Sed-Chr6:224580 | 1.90E-204 | dispersed | |
Sed06g0038 | Sed-Chr6:224580 | Sed09g1726 | Sed-Chr9:40469150 | 1.20E-195 | dispersed | |
Sed06g0037 | Sed-Chr6:219585 | Sed06g0038 | Sed-Chr6:224580 | 1.40E-106 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed06g0038 | K01051 | - | csv:101207996 | 834.713 |