Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g0044 ATGGGATCAATGGAGGAGAGAACAAATTACCAATCAGATGAAGATATTCCATTGAAGGCAACACCAGTGGTGAAAAACGTATTGCATAGCTTTGATTGTGAGACAGCTCATGTGCGTTCTTCTTCCCCAGATGATAAAAGATGGTGGAAGACTAACAACATTCGTATTAGACCTCTTGAAAGTGCTAAATTAGTGCTGATTAATGCAAAGATCAACTTGTTACTTCCTTTTGGTCCTTTGGCAATCCTGCTACACTATTTAACTCGAAATCATGGATTGGTCTTCTTTTTCACTTTACTTGGAATTACACCTTTGGCGGAACGGCTTGGTTATGCAACCGAGCAGCTTGCTTTCTTTACTGGACCAACAGTTGGTGGTCTTCTAAATGCAACGTTTGGAAATGCAATTGAAATGATTATATCAATGTATGCATTAAAGAGTGGAATGATTAGGGTTGTTCAACAGTCGTTACTGGGGTCGATCTTGTCGAATATGCTCTTAGTGCTCGGTTGCGCTTTCTTCACTGGTGGCATTGTTCATCATAAGAAGGTTCAGACTTTCAATAAGGGCACTGCTGTTGTGAATTCAGGATTGTTGTTGATGGCTGTTATGGGAACAACGCTTCCGGCTGTGCTTCATTTCACCCACACAGAACTTCATTCTGGAGAGTCAGCATTGTCCCTTTCAAGATTTAGTAGTTGTATAATGTTAATTGCATATGCAAGCTACCTTTTCTTTCAACTAAAAAGTCAGAGTAATCTCTATGGTCCTCCTGATGGGGAAGGTGATGATGAAGTTGAGGGGGATTCTGAGATTTATGCTTGGGAAGCAATTGGATGGCTTGCTATCTTGACTGTATGGGTATCCGTTTTATCTGGATACCTTGTCGATGCTATCGAGGGAGCATCTGAATCATTACATTTGCCAGTGGCTTTTATCAGTGTAATTTTGTTGCCAATTGTTGGGAATGCTGCTGAACATGCAAGTGCAATCATGTTTGCCATGAAGGATAAGCTTGACATCGCCCTTGGAGTTGCAATTGGATCATCAACACAAATATCCATGTTTGTGGTGAGTCTTGAAGATTCTTTTCAAGTTTCTACCAACACTTGA 1113 40.7 MGSMEERTNYQSDEDIPLKATPVVKNVLHSFDCETAHVRSSSPDDKRWWKTNNIRIRPLESAKLVLINAKINLLLPFGPLAILLHYLTRNHGLVFFFTLLGITPLAERLGYATEQLAFFTGPTVGGLLNATFGNAIEMIISMYALKSGMIRVVQQSLLGSILSNMLLVLGCAFFTGGIVHHKKVQTFNKGTAVVNSGLLLMAVMGTTLPAVLHFTHTELHSGESALSLSRFSSCIMLIAYASYLFFQLKSQSNLYGPPDGEGDDEVEGDSEIYAWEAIGWLAILTVWVSVLSGYLVDAIEGASESLHLPVAFISVILLPIVGNAAEHASAIMFAMKDKLDIALGVAIGSSTQISMFVVSLEDSFQVSTNT 370
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 253475 258911 - Sed0004472.1 Sed06g0044 716587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g0044 370 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 26 358 IPR004713 GO:0006812(InterPro)|GO:0006874(PANTHER)|GO:0008324(InterPro)|GO:0009705(PANTHER)|GO:0015369(PANTHER)|GO:0016020(InterPro)|GO:0070588(PANTHER)
Sed06g0044 370 Pfam Sodium/calcium exchanger protein 277 360 IPR004837 GO:0016020(InterPro)|GO:0055085(InterPro)
Sed06g0044 370 Pfam Sodium/calcium exchanger protein 93 248 IPR004837 GO:0016020(InterPro)|GO:0055085(InterPro)
Sed06g0044 370 Gene3D - 265 368 IPR044880 -
Sed06g0044 370 Gene3D - 122 260 IPR044880 -
Sed06g0044 370 FunFam Vacuolar cation/proton exchanger 122 261 - -
Sed06g0044 370 NCBIfam calcium/proton exchanger 74 358 IPR004798 GO:0006816(InterPro)|GO:0015369(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g0044 Sed-Chr6:253475 Sed08g2887 Sed-Chr8:39978048 5.40E-112 dispersed
Sed06g0044 Sed-Chr6:253475 Sed06g2276 Sed-Chr6:46282696 3.00E-179 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g0044 K07300 - csv:101219432 604.749