Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g0045 ATGAGGCCGCAGGGTGTGAATCCGGCCACCGATCGCCCCCGTCGCCGTCTCAATCTCACCCTCCCTCTTCCGCAGAGAGACAATACCTCCCTGGCCGTTCCTCTCCCTCTCCCGCCGCCGGCGTCTTCCAACCCCATGCCTCCTCCTCCCTCCACCAGCCGTCCGCCGGAGCCTCACCACCGCCGTCAGGTCTTCACCCTCTCCGATTTCGACCGCGTCAGTCGAATTGGAAGCGGATGCGGCGGCACCGTCTACAAAGTCATCCACCGCCCCACCGCCCGCGTCTATGCCCTCAAAGTCATTTACGGCAACCACGAGGACGCGGTCCGCCTCCAGATGTGCCGCGAGGTCGAGATCCTTCGCGATGTTGATAATCCCTACGTGGTGAAGTGCCACGATATGTTCGATCACAACGGCGAAATCCAGGTTCTTCTCGAGTACATGGATCGGGGATCTCTGGAAGGAACGCACATCCCTAACGAATCTCATCTCTCCGATTTGGCCCGCCAGATTCTCGGCGGTCTCGCTTATCTCCACAGCCGCCGCATCGTTCATCGCGATATCAAACCCTCCAATCTCCTTATTAACTCACGGAGGCAGGTGAAGATCGCCGATTTCGGCGTCGGTCGAATCTTGGAGCAAACCATGGATCCTTGCAACTCCTCGGTTGGGACGATTGCGTACATGAGCCCTGAGAGGATCAACTCCGATCTGAATCAGGGGCAGTACAATGGCTACGCAGGGGATATTTGGAGCTTTGGGGTTAGCATATTGGAATTCTATCTCGGACGGTTTCCTCTCGCCGTGGCGAGGTCCGGGGATTGGGCCAGCTTGATGTGTGCTATTTGTATGGCTCAGCCACCGGAGGCGCCGCCGTCGGCTTCGCCCGAGTTTCGACATTTTATTGCCTGTTGTCTGCAGAGAGAAGCTCGGAAGAGATGGACTGCAGCTGCATTACTGGAACATGCGTTCATAGCCAGGAAAAATGGAGCGGCCGGTCAGTACCAGAATCAACAGACTCATCACCAGAATCTTCGTCAGCTATTGCCGCCGCCGCCCCTTCAGCCTCCCAGCCTTTCTTGA 1083 57.62 MRPQGVNPATDRPRRRLNLTLPLPQRDNTSLAVPLPLPPPASSNPMPPPPSTSRPPEPHHRRQVFTLSDFDRVSRIGSGCGGTVYKVIHRPTARVYALKVIYGNHEDAVRLQMCREVEILRDVDNPYVVKCHDMFDHNGEIQVLLEYMDRGSLEGTHIPNESHLSDLARQILGGLAYLHSRRIVHRDIKPSNLLINSRRQVKIADFGVGRILEQTMDPCNSSVGTIAYMSPERINSDLNQGQYNGYAGDIWSFGVSILEFYLGRFPLAVARSGDWASLMCAICMAQPPEAPPSASPEFRHFIACCLQREARKRWTAAALLEHAFIARKNGAAGQYQNQQTHHQNLRQLLPPPPLQPPSLS 360
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 259746 261458 - Sed0017084.1 Sed06g0045 716588

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g0045 360 MobiDBLite consensus disorder prediction 335 360 - -
Sed06g0045 360 ProSiteProfiles Protein kinase domain profile. 70 325 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed06g0045 360 SMART serkin_6 70 325 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed06g0045 360 Gene3D Transferase(Phosphotransferase) domain 1 152 348 - -
Sed06g0045 360 PANTHER DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED 63 332 - GO:0000165(PANTHER)|GO:0004708(PANTHER)
Sed06g0045 360 Gene3D Phosphorylase Kinase; domain 1 54 149 - -
Sed06g0045 360 FunFam Mitogen-activated protein kinase 2 150 337 - -
Sed06g0045 360 CDD PKc_MAPKK_plant_like 68 325 - -
Sed06g0045 360 SUPERFAMILY Protein kinase-like (PK-like) 43 332 IPR011009 -
Sed06g0045 360 Pfam Protein kinase domain 72 325 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed06g0045 360 MobiDBLite consensus disorder prediction 1 60 - -
Sed06g0045 360 ProSitePatterns Protein kinases ATP-binding region signature. 76 99 IPR017441 GO:0005524(InterPro)
Sed06g0045 360 MobiDBLite consensus disorder prediction 33 54 - -
Sed06g0045 360 ProSitePatterns Serine/Threonine protein kinases active-site signature. 183 195 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g0045 K13413 - - csv:101219669 558.525
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g0045 Sed-Chr6:259746 Sed08g2774 Sed-Chr8:39332288 2.30E-83 dispersed
Sed06g0045 Sed-Chr6:259746 Sed06g2275 Sed-Chr6:46280110 1.80E-168 wgd
Sed06g0045 Sed-Chr6:259746 Sed08g0890 Sed-Chr8:7463533 2.20E-54 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed08g0890 . 29 354 MAP Kinase Kinase Gene Family AT4G26070 69.9 9.3e-135 477.6
Sed08g0891 . 29 354 MAP Kinase Kinase Gene Family AT4G26070 69.9 9.3e-135 477.6
Sed12g1735 . 18 350 MAP Kinase Kinase Gene Family AT4G26070 67.4 1.8e-133 473.4
Sed12g1736 . 18 350 MAP Kinase Kinase Gene Family AT4G26070 67.4 1.8e-133 473.4
Sed12g1737 . 18 350 MAP Kinase Kinase Gene Family AT4G26070 67.4 1.8e-133 473.4
Sed11g0009 . 32 356 MAP Kinase Kinase Gene Family AT4G26070 66.0 2.3e-125 446.4
Sed11g0012 . 32 356 MAP Kinase Kinase Gene Family AT4G26070 66.0 2.3e-125 446.4
Sed11g0010 . 32 312 MAP Kinase Kinase Gene Family AT4G26070 67.0 1.4e-109 394.0
Sed03g1751 . 26 351 MAP Kinase Kinase Gene Family AT4G26070 54.7 1.8e-106 383.6
Sed11g0011 . 1 249 MAP Kinase Kinase Gene Family AT4G26070 65.2 1.6e-94 344.0
Sed03g1752 . 26 242 MAP Kinase Kinase Gene Family AT4G26070 52.5 5.6e-63 239.2
Sed08g0890 . 1 327 MAP Kinase Kinase Gene Family AT4G29810 69.0 3.5e-134 475.7
Sed08g0891 . 1 327 MAP Kinase Kinase Gene Family AT4G29810 69.0 3.5e-134 475.7
Sed12g1735 . 1 326 MAP Kinase Kinase Gene Family AT4G29810 68.4 1.1e-132 470.7
Sed12g1736 . 1 326 MAP Kinase Kinase Gene Family AT4G29810 68.4 1.1e-132 470.7
Sed12g1737 . 1 326 MAP Kinase Kinase Gene Family AT4G29810 68.4 1.1e-132 470.7
Sed11g0009 . 6 330 MAP Kinase Kinase Gene Family AT4G29810 63.1 1.0e-117 421.0
Sed11g0012 . 6 330 MAP Kinase Kinase Gene Family AT4G29810 63.1 1.0e-117 421.0
Sed11g0010 . 6 313 MAP Kinase Kinase Gene Family AT4G29810 62.4 1.3e-109 394.0
Sed03g1751 . 10 324 MAP Kinase Kinase Gene Family AT4G29810 58.8 1.5e-108 390.6
Sed11g0011 . 1 223 MAP Kinase Kinase Gene Family AT4G29810 65.6 4.8e-83 305.8
Sed03g1752 . 10 239 MAP Kinase Kinase Gene Family AT4G29810 58.8 6.3e-75 278.9
Sed08g1406 . 36 518 MAP Kinase Kinase Gene Family AT5G40440 78.7 8.9e-227 783.9
Sed06g0519 . 101 432 MAP Kinase Kinase Gene Family AT5G40440 59.4 1.6e-111 401.0
Sed11g0011 . 35 247 MAP Kinase Kinase Gene Family AT5G40440 52.3 1.4e-57 221.9
Sed06g2275 . 1 360 MAP Kinase Kinase Gene Family AT1G51660 69.0 9.4e-133 471.1
Sed06g0045 . 68 352 MAP Kinase Kinase Gene Family AT1G51660 75.1 2.3e-123 439.9
Sed01g1782 . 3 313 MAP Kinase Kinase Gene Family AT1G51660 50.2 2.3e-83 307.0
Sed08g2774 . 52 320 MAP Kinase Kinase Gene Family AT1G51660 53.2 7.0e-80 295.4
Sed06g2275 . 1 360 MAP Kinase Kinase Gene Family AT3G21220 66.5 1.3e-128 457.2
Sed06g0045 . 66 352 MAP Kinase Kinase Gene Family AT3G21220 73.5 2.0e-124 443.4
Sed01g1782 . 32 311 MAP Kinase Kinase Gene Family AT3G21220 53.9 5.5e-82 302.4
Sed08g2774 . 52 316 MAP Kinase Kinase Gene Family AT3G21220 52.8 3.9e-80 296.2
Sed03g1751 . 1 354 MAP Kinase Kinase Gene Family AT5G56580 82.8 4.2e-170 595.1
Sed12g1735 . 8 342 MAP Kinase Kinase Gene Family AT5G56580 60.5 6.3e-118 421.8
Sed12g1736 . 8 342 MAP Kinase Kinase Gene Family AT5G56580 60.5 6.3e-118 421.8
Sed12g1737 . 8 342 MAP Kinase Kinase Gene Family AT5G56580 60.5 6.3e-118 421.8
Sed08g0890 . 7 353 MAP Kinase Kinase Gene Family AT5G56580 58.6 1.2e-116 417.5
Sed08g0891 . 7 353 MAP Kinase Kinase Gene Family AT5G56580 58.6 1.2e-116 417.5
Sed11g0009 . 6 345 MAP Kinase Kinase Gene Family AT5G56580 55.8 1.6e-108 390.6
Sed11g0012 . 6 345 MAP Kinase Kinase Gene Family AT5G56580 55.8 1.6e-108 390.6
Sed03g1752 . 1 234 MAP Kinase Kinase Gene Family AT5G56580 83.4 2.0e-108 390.2
Sed11g0010 . 6 313 MAP Kinase Kinase Gene Family AT5G56580 55.2 1.5e-95 347.4
Sed11g0011 . 1 238 MAP Kinase Kinase Gene Family AT5G56580 60.4 3.3e-82 303.1
Sed01g1782 . 1 307 MAP Kinase Kinase Gene Family AT1G18350 64.2 2.8e-106 382.9
Sed08g2774 . 1 314 MAP Kinase Kinase Gene Family AT1G18350 60.6 2.2e-103 373.2
Sed06g0045 . 68 325 MAP Kinase Kinase Gene Family AT1G18350 51.9 4.4e-75 279.3
Sed01g1782 . 1 295 MAP Kinase Kinase Gene Family AT3G06230 51.6 5.8e-77 285.4
Sed08g2774 . 52 302 MAP Kinase Kinase Gene Family AT3G06230 56.1 2.9e-76 283.1
Sed01g1782 . 1 307 MAP Kinase Kinase Gene Family AT1G73500 66.7 7.7e-112 401.4
Sed08g2774 . 1 314 MAP Kinase Kinase Gene Family AT1G73500 63.7 6.1e-109 391.7
Sed06g0045 . 69 325 MAP Kinase Kinase Gene Family AT1G73500 52.1 1.1e-76 284.6
Sed06g2275 . 72 331 MAP Kinase Kinase Gene Family AT1G73500 51.7 5.2e-76 282.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009405 0 1 0 1 0 1 2 1 1 1 1 1 2 1 1 1 1 3 2 1 1 1 1 1 1 1 1 2 1 1 33
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79311 PF00069 Pkinase 2.20E-59 CL0016 Sed PK