Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed06g0045 | ATGAGGCCGCAGGGTGTGAATCCGGCCACCGATCGCCCCCGTCGCCGTCTCAATCTCACCCTCCCTCTTCCGCAGAGAGACAATACCTCCCTGGCCGTTCCTCTCCCTCTCCCGCCGCCGGCGTCTTCCAACCCCATGCCTCCTCCTCCCTCCACCAGCCGTCCGCCGGAGCCTCACCACCGCCGTCAGGTCTTCACCCTCTCCGATTTCGACCGCGTCAGTCGAATTGGAAGCGGATGCGGCGGCACCGTCTACAAAGTCATCCACCGCCCCACCGCCCGCGTCTATGCCCTCAAAGTCATTTACGGCAACCACGAGGACGCGGTCCGCCTCCAGATGTGCCGCGAGGTCGAGATCCTTCGCGATGTTGATAATCCCTACGTGGTGAAGTGCCACGATATGTTCGATCACAACGGCGAAATCCAGGTTCTTCTCGAGTACATGGATCGGGGATCTCTGGAAGGAACGCACATCCCTAACGAATCTCATCTCTCCGATTTGGCCCGCCAGATTCTCGGCGGTCTCGCTTATCTCCACAGCCGCCGCATCGTTCATCGCGATATCAAACCCTCCAATCTCCTTATTAACTCACGGAGGCAGGTGAAGATCGCCGATTTCGGCGTCGGTCGAATCTTGGAGCAAACCATGGATCCTTGCAACTCCTCGGTTGGGACGATTGCGTACATGAGCCCTGAGAGGATCAACTCCGATCTGAATCAGGGGCAGTACAATGGCTACGCAGGGGATATTTGGAGCTTTGGGGTTAGCATATTGGAATTCTATCTCGGACGGTTTCCTCTCGCCGTGGCGAGGTCCGGGGATTGGGCCAGCTTGATGTGTGCTATTTGTATGGCTCAGCCACCGGAGGCGCCGCCGTCGGCTTCGCCCGAGTTTCGACATTTTATTGCCTGTTGTCTGCAGAGAGAAGCTCGGAAGAGATGGACTGCAGCTGCATTACTGGAACATGCGTTCATAGCCAGGAAAAATGGAGCGGCCGGTCAGTACCAGAATCAACAGACTCATCACCAGAATCTTCGTCAGCTATTGCCGCCGCCGCCCCTTCAGCCTCCCAGCCTTTCTTGA | 1083 | 57.62 | MRPQGVNPATDRPRRRLNLTLPLPQRDNTSLAVPLPLPPPASSNPMPPPPSTSRPPEPHHRRQVFTLSDFDRVSRIGSGCGGTVYKVIHRPTARVYALKVIYGNHEDAVRLQMCREVEILRDVDNPYVVKCHDMFDHNGEIQVLLEYMDRGSLEGTHIPNESHLSDLARQILGGLAYLHSRRIVHRDIKPSNLLINSRRQVKIADFGVGRILEQTMDPCNSSVGTIAYMSPERINSDLNQGQYNGYAGDIWSFGVSILEFYLGRFPLAVARSGDWASLMCAICMAQPPEAPPSASPEFRHFIACCLQREARKRWTAAALLEHAFIARKNGAAGQYQNQQTHHQNLRQLLPPPPLQPPSLS | 360 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 259746 | 261458 | - | Sed0017084.1 | Sed06g0045 | 716588 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed06g0045 | 360 | MobiDBLite | consensus disorder prediction | 335 | 360 | - | - | |
Sed06g0045 | 360 | ProSiteProfiles | Protein kinase domain profile. | 70 | 325 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed06g0045 | 360 | SMART | serkin_6 | 70 | 325 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed06g0045 | 360 | Gene3D | Transferase(Phosphotransferase) domain 1 | 152 | 348 | - | - | |
Sed06g0045 | 360 | PANTHER | DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED | 63 | 332 | - | GO:0000165(PANTHER)|GO:0004708(PANTHER) | |
Sed06g0045 | 360 | Gene3D | Phosphorylase Kinase; domain 1 | 54 | 149 | - | - | |
Sed06g0045 | 360 | FunFam | Mitogen-activated protein kinase 2 | 150 | 337 | - | - | |
Sed06g0045 | 360 | CDD | PKc_MAPKK_plant_like | 68 | 325 | - | - | |
Sed06g0045 | 360 | SUPERFAMILY | Protein kinase-like (PK-like) | 43 | 332 | IPR011009 | - | |
Sed06g0045 | 360 | Pfam | Protein kinase domain | 72 | 325 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed06g0045 | 360 | MobiDBLite | consensus disorder prediction | 1 | 60 | - | - | |
Sed06g0045 | 360 | ProSitePatterns | Protein kinases ATP-binding region signature. | 76 | 99 | IPR017441 | GO:0005524(InterPro) | |
Sed06g0045 | 360 | MobiDBLite | consensus disorder prediction | 33 | 54 | - | - | |
Sed06g0045 | 360 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 183 | 195 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed06g0045 | Sed-Chr6:259746 | Sed08g2774 | Sed-Chr8:39332288 | 2.30E-83 | dispersed | |
Sed06g0045 | Sed-Chr6:259746 | Sed06g2275 | Sed-Chr6:46280110 | 1.80E-168 | wgd | |
Sed06g0045 | Sed-Chr6:259746 | Sed08g0890 | Sed-Chr8:7463533 | 2.20E-54 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
79311 | PF00069 | Pkinase | 2.20E-59 | CL0016 | Sed | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed06g0045 | K13413 | - | csv:101219669 | 558.525 |