Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g0045 ATGAGGCCGCAGGGTGTGAATCCGGCCACCGATCGCCCCCGTCGCCGTCTCAATCTCACCCTCCCTCTTCCGCAGAGAGACAATACCTCCCTGGCCGTTCCTCTCCCTCTCCCGCCGCCGGCGTCTTCCAACCCCATGCCTCCTCCTCCCTCCACCAGCCGTCCGCCGGAGCCTCACCACCGCCGTCAGGTCTTCACCCTCTCCGATTTCGACCGCGTCAGTCGAATTGGAAGCGGATGCGGCGGCACCGTCTACAAAGTCATCCACCGCCCCACCGCCCGCGTCTATGCCCTCAAAGTCATTTACGGCAACCACGAGGACGCGGTCCGCCTCCAGATGTGCCGCGAGGTCGAGATCCTTCGCGATGTTGATAATCCCTACGTGGTGAAGTGCCACGATATGTTCGATCACAACGGCGAAATCCAGGTTCTTCTCGAGTACATGGATCGGGGATCTCTGGAAGGAACGCACATCCCTAACGAATCTCATCTCTCCGATTTGGCCCGCCAGATTCTCGGCGGTCTCGCTTATCTCCACAGCCGCCGCATCGTTCATCGCGATATCAAACCCTCCAATCTCCTTATTAACTCACGGAGGCAGGTGAAGATCGCCGATTTCGGCGTCGGTCGAATCTTGGAGCAAACCATGGATCCTTGCAACTCCTCGGTTGGGACGATTGCGTACATGAGCCCTGAGAGGATCAACTCCGATCTGAATCAGGGGCAGTACAATGGCTACGCAGGGGATATTTGGAGCTTTGGGGTTAGCATATTGGAATTCTATCTCGGACGGTTTCCTCTCGCCGTGGCGAGGTCCGGGGATTGGGCCAGCTTGATGTGTGCTATTTGTATGGCTCAGCCACCGGAGGCGCCGCCGTCGGCTTCGCCCGAGTTTCGACATTTTATTGCCTGTTGTCTGCAGAGAGAAGCTCGGAAGAGATGGACTGCAGCTGCATTACTGGAACATGCGTTCATAGCCAGGAAAAATGGAGCGGCCGGTCAGTACCAGAATCAACAGACTCATCACCAGAATCTTCGTCAGCTATTGCCGCCGCCGCCCCTTCAGCCTCCCAGCCTTTCTTGA 1083 57.62 MRPQGVNPATDRPRRRLNLTLPLPQRDNTSLAVPLPLPPPASSNPMPPPPSTSRPPEPHHRRQVFTLSDFDRVSRIGSGCGGTVYKVIHRPTARVYALKVIYGNHEDAVRLQMCREVEILRDVDNPYVVKCHDMFDHNGEIQVLLEYMDRGSLEGTHIPNESHLSDLARQILGGLAYLHSRRIVHRDIKPSNLLINSRRQVKIADFGVGRILEQTMDPCNSSVGTIAYMSPERINSDLNQGQYNGYAGDIWSFGVSILEFYLGRFPLAVARSGDWASLMCAICMAQPPEAPPSASPEFRHFIACCLQREARKRWTAAALLEHAFIARKNGAAGQYQNQQTHHQNLRQLLPPPPLQPPSLS 360
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 259746 261458 - Sed0017084.1 Sed06g0045 716588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g0045 360 MobiDBLite consensus disorder prediction 335 360 - -
Sed06g0045 360 ProSiteProfiles Protein kinase domain profile. 70 325 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed06g0045 360 SMART serkin_6 70 325 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed06g0045 360 Gene3D Transferase(Phosphotransferase) domain 1 152 348 - -
Sed06g0045 360 PANTHER DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED 63 332 - GO:0000165(PANTHER)|GO:0004708(PANTHER)
Sed06g0045 360 Gene3D Phosphorylase Kinase; domain 1 54 149 - -
Sed06g0045 360 FunFam Mitogen-activated protein kinase 2 150 337 - -
Sed06g0045 360 CDD PKc_MAPKK_plant_like 68 325 - -
Sed06g0045 360 SUPERFAMILY Protein kinase-like (PK-like) 43 332 IPR011009 -
Sed06g0045 360 Pfam Protein kinase domain 72 325 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed06g0045 360 MobiDBLite consensus disorder prediction 1 60 - -
Sed06g0045 360 ProSitePatterns Protein kinases ATP-binding region signature. 76 99 IPR017441 GO:0005524(InterPro)
Sed06g0045 360 MobiDBLite consensus disorder prediction 33 54 - -
Sed06g0045 360 ProSitePatterns Serine/Threonine protein kinases active-site signature. 183 195 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g0045 Sed-Chr6:259746 Sed08g2774 Sed-Chr8:39332288 2.30E-83 dispersed
Sed06g0045 Sed-Chr6:259746 Sed06g2275 Sed-Chr6:46280110 1.80E-168 wgd
Sed06g0045 Sed-Chr6:259746 Sed08g0890 Sed-Chr8:7463533 2.20E-54 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79311 PF00069 Pkinase 2.20E-59 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g0045 K13413 - csv:101219669 558.525