Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g0051 ATGAATTCAAGTCCAAAGTCCTGTACCTCTCCTTTCACAGCAACTCAATGGCAAGAACTGGAACATCAAGCGCTGATCTTCAAATACATGGTTTCAGGAGTATCAATCCCTCCTGATCTAATCTTCTCTGTGAAAAGAAGCTTGGATTCCTCCATTTCTGCAAGACTATTCCCTCACCAACCCATTGGGTGGGGATGTTTTGAGATGGGTTTTGGCAGAAAAGCAGACCCTGAGCCAGGAAGGTGCAGAAGAACAGATGGGAAAAAATGGAGATGCTCAAAAGAAGCTTATCCAGACTCCAAATACTGCGAGAGGCACATGCATAGAGGCAGAAACCGTTCAAGAAAGCCTGTGGAAATCTCTTCAACTAAGAGCAGCCTCTCTTCATCCAATCCAACCTCATCTCCCTATTCTCTCTCTGCACTTTCTTCTTCTTCACCAACCTGTGAAACTCAACCTTTTCATCAAGCTCCTGTTGCTGCTGCTGCTACTTATCTTGAGTCATCTTTTCATCCATTTCTGTACCCTCAATCTTCCTCCTCCAGACCTCAATGTACTGATTTCTCTCCAAACAACACAAACCCTCAACTCTTTTTGTATTCAGGGACTCATTCTCAGACTGACAAAGAATACAGGGATATTAATGGTCCAAGAGAAGATGTGGGAGTGCAGGCCTTGTTCCCCTCAGTTGCAGATTCTACAAGAACCATAGGTGAGGTTTATAGTCAGCCAATAGGGATGGATTCTTATCAAGGATGCTACCAATCTGTTTCCCAAAGCCACCACCTTTACAGTTCCAAACAGGCAAGGCAACAACATGAGCAACACTGCTTTGTTTTGGGCACAGATTTCAATAAATCATCAAGGTCCTCTAAAACAGAGGAAGAACAAGAAGCAGAAACCCAGAAGCCACTACTCCACTTCTTTGAGGATTGCCCACCAAAAAACTCAGACTCCTGGCTTGATTTAGCTTCAAATTCAAGTTTACACAAAAGCTAA 999 43.54 MNSSPKSCTSPFTATQWQELEHQALIFKYMVSGVSIPPDLIFSVKRSLDSSISARLFPHQPIGWGCFEMGFGRKADPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVEISSTKSSLSSSNPTSSPYSLSALSSSSPTCETQPFHQAPVAAAATYLESSFHPFLYPQSSSSRPQCTDFSPNNTNPQLFLYSGTHSQTDKEYRDINGPREDVGVQALFPSVADSTRTIGEVYSQPIGMDSYQGCYQSVSQSHHLYSSKQARQQHEQHCFVLGTDFNKSSRSSKTEEEQEAETQKPLLHFFEDCPPKNSDSWLDLASNSSLHKS 332
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 308788 311391 + Sed0007816.1 Sed06g0051 716594

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g0051 332 ProSiteProfiles QLQ domain profile. 11 46 IPR014978 GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Sed06g0051 332 MobiDBLite consensus disorder prediction 288 305 - -
Sed06g0051 332 Pfam QLQ 11 44 IPR014978 GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Sed06g0051 332 PANTHER GROWTH-REGULATING FACTOR 5 6 324 IPR031137 GO:0005634(InterPro)|GO:0006351(InterPro)|GO:0032502(InterPro)
Sed06g0051 332 Pfam WRC 77 119 IPR014977 -
Sed06g0051 332 MobiDBLite consensus disorder prediction 103 144 - -
Sed06g0051 332 MobiDBLite consensus disorder prediction 119 144 - -
Sed06g0051 332 ProSiteProfiles WRC domain profile. 76 120 IPR014977 -
Sed06g0051 332 MobiDBLite consensus disorder prediction 285 308 - -
Sed06g0051 332 SMART QLQ_2 10 46 IPR014978 GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g0051 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g0553 Sed-Chr2:43115887 Sed06g0051 Sed-Chr6:308788 9.90E-29 dispersed
Sed03g1822 Sed-Chr3:12067691 Sed06g0051 Sed-Chr6:308788 8.90E-58 dispersed
Sed06g0051 Sed-Chr6:308788 Sed08g0909 Sed-Chr8:7619195 2.40E-58 dispersed
Sed06g0051 Sed-Chr6:308788 Sed06g2262 Sed-Chr6:46200318 7.10E-148 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed02g0553 . 46 368 GRF Transcription Factor Family AT3G52910 52.7 2.1e-58 224.2
Sed06g0051 . 11 110 GRF Transcription Factor Family AT3G13960 80.0 7.0e-49 192.6
Sed06g2262 . 2 110 GRF Transcription Factor Family AT3G13960 74.3 4.5e-48 189.9
Sed03g1822 . 2 111 GRF Transcription Factor Family AT3G13960 69.6 4.8e-42 169.9
Sed08g0909 . 8 110 GRF Transcription Factor Family AT3G13960 72.8 1.8e-41 167.9
Sed12g1716 . 3 105 GRF Transcription Factor Family AT3G13960 69.9 6.5e-39 159.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007893 1 3 1 1 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 2 2 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38778 PF08879 WRC 1.80E-21 No_clan Sed TF