Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g0051 ATGAATTCAAGTCCAAAGTCCTGTACCTCTCCTTTCACAGCAACTCAATGGCAAGAACTGGAACATCAAGCGCTGATCTTCAAATACATGGTTTCAGGAGTATCAATCCCTCCTGATCTAATCTTCTCTGTGAAAAGAAGCTTGGATTCCTCCATTTCTGCAAGACTATTCCCTCACCAACCCATTGGGTGGGGATGTTTTGAGATGGGTTTTGGCAGAAAAGCAGACCCTGAGCCAGGAAGGTGCAGAAGAACAGATGGGAAAAAATGGAGATGCTCAAAAGAAGCTTATCCAGACTCCAAATACTGCGAGAGGCACATGCATAGAGGCAGAAACCGTTCAAGAAAGCCTGTGGAAATCTCTTCAACTAAGAGCAGCCTCTCTTCATCCAATCCAACCTCATCTCCCTATTCTCTCTCTGCACTTTCTTCTTCTTCACCAACCTGTGAAACTCAACCTTTTCATCAAGCTCCTGTTGCTGCTGCTGCTACTTATCTTGAGTCATCTTTTCATCCATTTCTGTACCCTCAATCTTCCTCCTCCAGACCTCAATGTACTGATTTCTCTCCAAACAACACAAACCCTCAACTCTTTTTGTATTCAGGGACTCATTCTCAGACTGACAAAGAATACAGGGATATTAATGGTCCAAGAGAAGATGTGGGAGTGCAGGCCTTGTTCCCCTCAGTTGCAGATTCTACAAGAACCATAGGTGAGGTTTATAGTCAGCCAATAGGGATGGATTCTTATCAAGGATGCTACCAATCTGTTTCCCAAAGCCACCACCTTTACAGTTCCAAACAGGCAAGGCAACAACATGAGCAACACTGCTTTGTTTTGGGCACAGATTTCAATAAATCATCAAGGTCCTCTAAAACAGAGGAAGAACAAGAAGCAGAAACCCAGAAGCCACTACTCCACTTCTTTGAGGATTGCCCACCAAAAAACTCAGACTCCTGGCTTGATTTAGCTTCAAATTCAAGTTTACACAAAAGCTAA 999 43.54 MNSSPKSCTSPFTATQWQELEHQALIFKYMVSGVSIPPDLIFSVKRSLDSSISARLFPHQPIGWGCFEMGFGRKADPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVEISSTKSSLSSSNPTSSPYSLSALSSSSPTCETQPFHQAPVAAAATYLESSFHPFLYPQSSSSRPQCTDFSPNNTNPQLFLYSGTHSQTDKEYRDINGPREDVGVQALFPSVADSTRTIGEVYSQPIGMDSYQGCYQSVSQSHHLYSSKQARQQHEQHCFVLGTDFNKSSRSSKTEEEQEAETQKPLLHFFEDCPPKNSDSWLDLASNSSLHKS 332
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 308788 311391 + Sed0007816.1 Sed06g0051 716594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g0051 332 ProSiteProfiles QLQ domain profile. 11 46 IPR014978 GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Sed06g0051 332 MobiDBLite consensus disorder prediction 288 305 - -
Sed06g0051 332 Pfam QLQ 11 44 IPR014978 GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Sed06g0051 332 PANTHER GROWTH-REGULATING FACTOR 5 6 324 IPR031137 GO:0005634(InterPro)|GO:0006351(InterPro)|GO:0032502(InterPro)
Sed06g0051 332 Pfam WRC 77 119 IPR014977 -
Sed06g0051 332 MobiDBLite consensus disorder prediction 103 144 - -
Sed06g0051 332 MobiDBLite consensus disorder prediction 119 144 - -
Sed06g0051 332 ProSiteProfiles WRC domain profile. 76 120 IPR014977 -
Sed06g0051 332 MobiDBLite consensus disorder prediction 285 308 - -
Sed06g0051 332 SMART QLQ_2 10 46 IPR014978 GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g0553 Sed-Chr2:43115887 Sed06g0051 Sed-Chr6:308788 9.90E-29 dispersed
Sed03g1822 Sed-Chr3:12067691 Sed06g0051 Sed-Chr6:308788 8.90E-58 dispersed
Sed06g0051 Sed-Chr6:308788 Sed08g0909 Sed-Chr8:7619195 2.40E-58 dispersed
Sed06g0051 Sed-Chr6:308788 Sed06g2262 Sed-Chr6:46200318 7.10E-148 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38778 PF08879 WRC 1.80E-21 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g0051 - - - 0.0