Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g0066 ATGTACTTTTTTTTTTCTTTTATTTACCACAAAATATCTCATGGTTTTATATGTTGTCTGCATACAGATATGGCGGGTCTAGCTCCAGAAGGTTCCCAATTTGATGCACGTCAGTTTGACTCTAAAATGCATGAGTTACTTTCAGCTGATGGGCAGGATTTCTTTACCTCTTACGATGAGGTTTTTGATAGTTTTGATTCTATGGGCCTGCAAGAAAACCTTCTCAGAGGCATCTATGCTTATGGTTTTGAGAAGCCATCTGCAATTCAGCAAAGGGGAATTGTTCCTTTCTGCAAAGGGCTTGATGTGATCCAACAGGCGCAGTCTGGAACAGGAAAGACTGCTACTTTCTGTTCTGGCATCCTGCAGCAACTTGATTATGGTCTCGTGCAATGCCAGGCTTTGGTCCTTGCACCCACTAGGGAACTTGCTCAACAGATTGAGAAGGTTATGCGTGCCCTTGGTGATTATCTTGGTGTGAAGGTTCATGCTTGTGTGGGTGGGACAAGTGTACGTGAGGACCAGCGCATTCTTCAAGCTGGTGTTCACGTTGTTGTTGGTACTCCTGGTCGTGTGTTTGATATGTTGCGAAGACAGTCACTTCGTCCTGACTGCATTAAGATGTTTGTGTTGGATGAAGCTGATGAGATGCTTTCTCGTGGATTCAAGGACCAGATTTATGACATTTTTCAGCTGCTACCATCCAAGATTCAGGTTGGGGTATTCTCTGCTACAATGCCCCCAGAAGCCCTTGAGATCACCCGGAAGTTCATGAACAAGCCAGTGAGAATTCTCGTCAAGCGCGACGAGCTCACCTTGGAAGGTATCAAGCAGTTTTATGTCAATGTCGACAAGGAAGACTGGAAGCTCGAAACTCTCTGTGATCTTTATGAGACTCTGGCCATCACCCAGAGTGTCATCTTCGTCAATACTCGTCGTAAAGTGGATTGGCTCACTGATAAGATGCGAAGCCGTGACCACACGGTATCTGCCACCCATGGTGACATGGACCAAAACACCCGAGACATTATTATGCGTGAGTTCCGTTCTGGCTCGTCCAGAGTTCTCATCACCACGGATCTATTGGCCCGTGGTATCGATGTGCAGCAGGTTTCTCTTGTTATTAACTATGATCTGCCGACACAACCAGAGAATTACCTCCATCGTATAGGAAGAAGTGGACGTTTTGGAAGAAAGGGAGTTGCCATCAACTTTGTAACTGGTGACGACGAAAGAATGCTATTTGACATTCAGAAGTTTTATAACGTGGTAGTAGAAGAGCTTCCAGCTAACGTTGCCGATCTCCTGTGA 1311 45.46 MYFFFSFIYHKISHGFICCLHTDMAGLAPEGSQFDARQFDSKMHELLSADGQDFFTSYDEVFDSFDSMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDCIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEDWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTGDDERMLFDIQKFYNVVVEELPANVADLL 436
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 402147 406410 - Sed0021931.1 Sed06g0066 716609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g0066 436 SMART helicmild6 316 397 IPR001650 -
Sed06g0066 436 SMART ultradead3 82 279 IPR014001 -
Sed06g0066 436 CDD DEADc_EIF4A 68 265 - -
Sed06g0066 436 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 63 91 IPR014014 GO:0003724(InterPro)
Sed06g0066 436 CDD SF2_C_DEAD 276 406 - -
Sed06g0066 436 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 94 264 IPR014001 -
Sed06g0066 436 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 132 417 IPR027417 -
Sed06g0066 436 FunFam Eukaryotic initiation factor 4A-III 271 436 - -
Sed06g0066 436 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 60 422 - GO:0003723(PANTHER)|GO:0003724(PANTHER)
Sed06g0066 436 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 275 436 IPR001650 -
Sed06g0066 436 Gene3D - 272 436 IPR027417 -
Sed06g0066 436 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 210 218 IPR000629 -
Sed06g0066 436 FunFam Eukaryotic initiation factor 4A-II 51 270 - -
Sed06g0066 436 Pfam Helicase conserved C-terminal domain 289 397 IPR001650 -
Sed06g0066 436 Gene3D - 53 271 IPR027417 -
Sed06g0066 436 Pfam DEAD/DEAH box helicase 88 250 IPR011545 GO:0003676(InterPro)|GO:0005524(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g0796 Sed-Chr4:6641767 Sed06g0066 Sed-Chr6:402147 4.20E-230 dispersed
Sed06g0066 Sed-Chr6:402147 Sed08g1779 Sed-Chr8:32579374 5.90E-227 dispersed
Sed06g0066 Sed-Chr6:402147 Sed06g0067 Sed-Chr6:410407 5.70E-238 tandem
Sed06g0066 Sed-Chr6:402147 Sed09g1673 Sed-Chr9:40115893 1.60E-232 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g0066 K03257 - csv:101223055 804.668