Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g0074 ATGATGGAAGAGATGTCTCCTGCTGTTTCTTTGACCCTTAGTTTAGGTAATACGAAATCTGATACCTCGGGAAGTCCTAGCCATGTCGAATTTACAGCAATAAAGTTGGTAACCGATACGGTTAATCTGTTCTCTGCGTCGGCCCCTGACTTGGGTTCTATTGGTAATGGTAGTTTCCATGATTTTAATAGTATAGTTGATAGTGTAACCGTGTCTCAATCCAGTGATAGTTGTCAAGGTAGAGACGGTTTTGGGGGGTTGTTGCCGAAGAATGGCGCGAGTTTAACTGCAGATAAGAAAGATGCAAGTTTGTCAACTACAGTTGACCCTGATGAAATGATAGATGATGGATTATTTGCTATTGATGGTGGTTCTAATATTAATGTGAAAGAAGTTGTCAACATTGGAAATGTTAGTAATGGTCAAATTGTTGCCCAGGCTATTATCTTGGTGGATTCAGTGAAGATTCCTACCAATAAACTTATTGTTGCGACGGTGAGCCCAGGTTTAGAGGTGTCTGCAACGTCCGAGCTGAACGCCCCTGTAGTAGTTTTCCAATCAAAAGAGGGGGATGGTGTTCATAAAGGAATTCGTAGCCTCTTTGAACGGGATTGTGTCCCCCTTTGGGGTTCCGTATCGATTTGTGGTAGAAGACCAGAAATGGAAGACTCAATTGCTGCGGTTCCTTGTTTTTCGAAGATTCCTATCGAAATGCTTGTTGGAAATGGTTTGCTTAATGGAATGGGACAAAGTCTAACACATCTCAATAGCCATTTTTTTGGTGTTTATGATGGACATGGGGGCTCTCAGGTTGCTGATTATTGTCGAGAGTGGATACACCTGGCATTAGCTGAAGAGATTAGAGGATTCAAGCGAAATGCAAATAATGGAAGCAATGGAGAGAACTGGCAGCAGGATTGGGAGAAAACATTTACCAATTGCTTTCTTAGGGTTGATGATGAAATAGAAGGAAAAGTTGGGAGATCAGTCGGTGGGAGCGATGAAGATATTTTCGATACTAGCTTCGAGCCTGTTGCCCCAGAAACTGTTGGCTCAACCGCCGTAGTTGCCGTGGTCTGTTCATCACACATCATAGTTGCAAACTGTGGTGATTCAAGAGCAGTCCTATGCCGTGGCAAAGAACCCATGGCACTATCAGTCGATCATAAAATCGGGAAGATGAATACGCTCGGATTGAATCATCTGGGGGCAAGGTCATCCAGTGGAATGGACATCGTGTGTTCGGTGTTCTTGCAATGTCGAGATCCATTGGTGATAGATATTTGA 1287 43.28 MMEEMSPAVSLTLSLGNTKSDTSGSPSHVEFTAIKLVTDTVNLFSASAPDLGSIGNGSFHDFNSIVDSVTVSQSSDSCQGRDGFGGLLPKNGASLTADKKDASLSTTVDPDEMIDDGLFAIDGGSNINVKEVVNIGNVSNGQIVAQAIILVDSVKIPTNKLIVATVSPGLEVSATSELNAPVVVFQSKEGDGVHKGIRSLFERDCVPLWGSVSICGRRPEMEDSIAAVPCFSKIPIEMLVGNGLLNGMGQSLTHLNSHFFGVYDGHGGSQVADYCREWIHLALAEEIRGFKRNANNGSNGENWQQDWEKTFTNCFLRVDDEIEGKVGRSVGGSDEDIFDTSFEPVAPETVGSTAVVAVVCSSHIIVANCGDSRAVLCRGKEPMALSVDHKIGKMNTLGLNHLGARSSSGMDIVCSVFLQCRDPLVIDI 428
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 431511 435051 + Sed0016268.2 Sed06g0074 716617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g0074 428 Pfam Protein phosphatase 2C 230 391 IPR001932 -
Sed06g0074 428 PANTHER PROTEIN PHOSPHATASE 179 391 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0005634(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Sed06g0074 428 FunFam Protein phosphatase 2C 50 206 401 - -
Sed06g0074 428 Gene3D - 195 397 IPR036457 -
Sed06g0074 428 SMART PP2C_4 198 428 IPR001932 -
Sed06g0074 428 SUPERFAMILY PP2C-like 204 391 IPR036457 -
Sed06g0074 428 ProSitePatterns PPM-type phosphatase domain signature. 259 267 IPR000222 GO:0043169(InterPro)
Sed06g0074 428 ProSiteProfiles PPM-type phosphatase domain profile. 208 428 IPR001932 -
Sed06g0074 428 CDD PP2Cc 210 390 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g0074 Sed-Chr6:431511 Sed06g2236 Sed-Chr6:45984927 1.20E-179 dispersed
Sed06g0073 Sed-Chr6:431511 Sed06g0074 Sed-Chr6:431511 2.10E-221 tandem
Sed06g0074 Sed-Chr6:431511 Sed06g0075 Sed-Chr6:431511 1.30E-221 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g0074 K14497 - csv:101203499 623.239