Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g0075 ATGATGGAAGAGATGTCTCCTGCTGTTTCTTTGACCCTTAGTTTAGGTAATACGAAATCTGATACCTCGGGAAGTCCTAGCCATGTCGAATTTACAGCAATAAAGTTGGTAACCGATACGGTTAATCTGTTCTCTGCGTCGGCCCCTGACTTGGGTTCTATTGGTAATGGTAGTTTCCATGATTTTAATAGTATAGTTGATAGTGTAACCGTGTCTCAATCCAGTGATAGTTGTCAAGGTAGAGACGGTTTTGGGGGGTTGTTGCCGAAGAATGGCGCGAGTTTAACTGCAGATAAGAAAGATGCAAGTTTGTCAACTACAGTTGACCCTGATGAAATGATAGATGATGGATTATTTGCTATTGATGGTGGTTCTAATATTAATGTGAAAGAAGTTGTCAACATTGGAAATGTTAGTAATGGTCAAATTGTTGCCCAGGCTATTATCTTGGTGGATTCAGTGAAGATTCCTACCAATAAACTTATTGTTGCGACGGTGAGCCCAGGTTTAGAGGTGTCTGCAACGTCCGAGCTGAACGCCCCTGTAGTAGTTTTCCAATCAAAAGAGGGGGATGGTGTTCATAAAGGAATTCGTAGCCTCTTTGAACGGGATTGTGTCCCCCTTTGGGGTTCCGTATCGATTTGTGGTAGAAGACCAGAAATGGAAGACTCAATTGCTGCGGTTCCTTGTTTTTCGAAGATTCCTATCGAAATGCTTGTTGGAAATGGTTTGCTTAATGGAATGGGACAAAGTCTAACACATCTCAATAGCCATTTTTTTGGTGTTTATGATGGACATGGGGGCTCTCAGGTTGCTGATTATTGTCGAGAGTGGATACACCTGGCATTAGCTGAAGAGATTAGAGGATTCAAGCGAAATGCAAATAATGGAAGCAATGGAGAGAACTGGCAGCAGGATTGGGAGAAAACATTTACCAATTGCTTTCTTAGGGTTGATGATGAAATAGAAGGAAAAGTTGGGAGATCAGTCGGTGGGAGCGATGAAGATATTTTCGATACTAGCTTCGAGCCTGTTGCCCCAGAAACTGTTGGCTCAACCGCCGTAGTTGCCGTGGTCTGTTCATCACACATCATAGTTGCAAACTGTGGTGATTCAAGAGCAGTCCTATGCCGTGGCAAAGAACCCATGGCACTATCAGTCGATCATAAAGTACGCGATGCATTCGATCTCATATCGAATGATAGATAA 1209 42.85 MMEEMSPAVSLTLSLGNTKSDTSGSPSHVEFTAIKLVTDTVNLFSASAPDLGSIGNGSFHDFNSIVDSVTVSQSSDSCQGRDGFGGLLPKNGASLTADKKDASLSTTVDPDEMIDDGLFAIDGGSNINVKEVVNIGNVSNGQIVAQAIILVDSVKIPTNKLIVATVSPGLEVSATSELNAPVVVFQSKEGDGVHKGIRSLFERDCVPLWGSVSICGRRPEMEDSIAAVPCFSKIPIEMLVGNGLLNGMGQSLTHLNSHFFGVYDGHGGSQVADYCREWIHLALAEEIRGFKRNANNGSNGENWQQDWEKTFTNCFLRVDDEIEGKVGRSVGGSDEDIFDTSFEPVAPETVGSTAVVAVVCSSHIIVANCGDSRAVLCRGKEPMALSVDHKVRDAFDLISNDR 402
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 431511 435051 + Sed0016268.3 Sed06g0075 716618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g0075 402 PANTHER PROTEIN PHOSPHATASE 177 392 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0005634(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Sed06g0075 402 Gene3D - 195 396 IPR036457 -
Sed06g0075 402 SMART PP2C_4 198 400 IPR001932 -
Sed06g0075 402 ProSiteProfiles PPM-type phosphatase domain profile. 208 402 IPR001932 -
Sed06g0075 402 CDD PP2Cc 210 391 IPR001932 -
Sed06g0075 402 ProSitePatterns PPM-type phosphatase domain signature. 259 267 IPR000222 GO:0043169(InterPro)
Sed06g0075 402 SUPERFAMILY PP2C-like 203 392 IPR036457 -
Sed06g0075 402 FunFam Protein phosphatase 2C 50 206 397 - -
Sed06g0075 402 Pfam Protein phosphatase 2C 230 393 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g0073 Sed-Chr6:431511 Sed06g0075 Sed-Chr6:431511 2.10E-221 dispersed
Sed06g0075 Sed-Chr6:431511 Sed06g2236 Sed-Chr6:45984927 9.10E-182 dispersed
Sed06g0074 Sed-Chr6:431511 Sed06g0075 Sed-Chr6:431511 1.30E-221 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g0075 K14497 - csv:101203499 623.239