Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed06g0083 | ATGATAAAAAGTTTGTTATTTCAACAACAAGCTCAAGCTCAAGCTATGGAAGAAAATTTGTCGAATTTAACTTCACCTTCTGGTGAAGCTAGTAGCTGCTCCGGCAACCATTCCGATCAGATTCCGGCGAACTATGCCGGCAGCCAGTATTTTTCTGCCCCACCACCACCAAAAAAGAAGAGAAACCTCCCCGGAAATCCAGACCCGGATGCGGAAGTGATAGCGTTATCGCCGAAGACGCTAATGGCGACGAATAGATTCGTATGCGAGATATGCAACAAGGGGTTTCAAAGGGATCAAAATCTTCAACTTCATAGAAGAGGGCACAATTTGCCATGGAAATTGAAGCAAAGAGAAAACAAAGAAGTGATAAGGAAGAAAGTTTATGTGTGTCCAGAAACAAGTTGTGTTCATCATGATCCAACAAGGGCACTTGGGGATTTGACTGGAATTAAAAAGCACTTTTGTAGAAAACATGGTGAGAAGAAATGGAAATGTGACAAATGCTCTAAGAAATATGCAGTTCAATCTGATTGGAAAGCACATTCTAAGACTTGTGGCACTAGAGAGTACAGATGTGACTGTGGAACTCTTTTCTCAAGGAGGGACAGTTTCATAACCCACAGAGCTTTTTGTGATGCTTTAGCAGAGGAAAGTGCAAGAACCAATACATCAAACCCAATACTTATGACCAATAATAATAATAATATTAATATTAATAATCAAAACCCTCCACTAATTAATTCCCCTCCCAATAATATTTCTTCAATCTCTCACTTAAACTTCCAATCTCAATCCCAATCCCATTTCAATCCTTTAGATATCACCTCATTTAATTCCCTCAAAAAAGGAAACTCATCCAATTTCCTTCCCACATGGCTCCCTTGCCCTTCAAGATCATCATTAAATCATAATAATCAAAATCAAGACCTTAATCCCATAATTAACAACCCTAATCATCATCCTCTAATTCCAATTAGTGTTAATTCTCCACACATGTCAGCCACAGCACTTCTCCAAAAAGCAGCTCAAATGGGAGCTGCTGCCATGAGCAATGATGAACCCCACGTGCCTGACTCTCCTGCCTCACGTGACAATCATCAGATTTTGATGGGAATTTCTCAAACCACTTTTTCTCCCAGTGCTTTTGAAGGGGCCTCTTTTGAATTAGGTGCATTTGGAGGGGTATTTAAGAAAGATGAGATTTTTAATGAGAATTCAAGTGAAGGGTTGAGCACAAGAGATTTCTTGGGGCTTAGAGCAATTTCTCATAGTGAGTTTTTGAGTAATATTGCAGCTGCTGGTAATTATGGTAATTGCATCAATGGAGCTGCTGGTCAAAGTTCTCAAAGTCAAATTAAAAATCAAACCAGCTGGCAAGGTTAG | 1386 | 39.61 | MIKSLLFQQQAQAQAMEENLSNLTSPSGEASSCSGNHSDQIPANYAGSQYFSAPPPPKKKRNLPGNPDPDAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRENKEVIRKKVYVCPETSCVHHDPTRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAEESARTNTSNPILMTNNNNNININNQNPPLINSPPNNISSISHLNFQSQSQSHFNPLDITSFNSLKKGNSSNFLPTWLPCPSRSSLNHNNQNQDLNPIINNPNHHPLIPISVNSPHMSATALLQKAAQMGAAAMSNDEPHVPDSPASRDNHQILMGISQTTFSPSAFEGASFELGAFGGVFKKDEIFNENSSEGLSTRDFLGLRAISHSEFLSNIAAAGNYGNCINGAAGQSSQSQIKNQTSWQG | 461 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 477339 | 480875 | + | Sed0013448.1 | Sed06g0083 | 716626 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed06g0083 | 461 | Gene3D | Classic Zinc Finger | 142 | 222 | - | - | |
Sed06g0083 | 461 | SMART | c2h2final6 | 164 | 184 | IPR013087 | - | |
Sed06g0083 | 461 | SMART | c2h2final6 | 129 | 159 | IPR013087 | - | |
Sed06g0083 | 461 | SMART | c2h2final6 | 87 | 109 | IPR013087 | - | |
Sed06g0083 | 461 | Pfam | Zinc finger, C2H2 type | 87 | 109 | IPR013087 | - | |
Sed06g0083 | 461 | MobiDBLite | consensus disorder prediction | 17 | 47 | - | - | |
Sed06g0083 | 461 | Pfam | BIRD-IDD transcription factor, second C2H2 zinc finger | 125 | 159 | - | - | |
Sed06g0083 | 461 | Gene3D | Classic Zinc Finger | 66 | 138 | - | - | |
Sed06g0083 | 461 | Pfam | BIRD-IDD transcription factor, third C2HC zinc finger | 163 | 187 | - | - | |
Sed06g0083 | 461 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 87 | 109 | IPR013087 | - | |
Sed06g0083 | 461 | FunFam | protein indeterminate-domain 5, chloroplastic-like | 142 | 221 | - | - | |
Sed06g0083 | 461 | SUPERFAMILY | beta-beta-alpha zinc fingers | 86 | 184 | IPR036236 | - | |
Sed06g0083 | 461 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 89 | 109 | IPR013087 | - | |
Sed06g0083 | 461 | FunFam | protein indeterminate-domain 12-like | 66 | 135 | - | - | |
Sed06g0083 | 461 | Pfam | BIRD-IDD transcription factor, fourth C2HC zinc finger | 190 | 226 | - | - | |
Sed06g0083 | 461 | MobiDBLite | consensus disorder prediction | 17 | 71 | - | - | |
Sed06g0083 | 461 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 41 | 432 | IPR031140 | GO:0003700(PANTHER)|GO:0005634(PANTHER) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed04g1353 | Sed-Chr4:27859027 | Sed06g0083 | Sed-Chr6:477339 | 4.90E-82 | dispersed | |
Sed04g1354 | Sed-Chr4:27859027 | Sed06g0083 | Sed-Chr6:477339 | 5.20E-82 | dispersed | |
Sed05g0941 | Sed-Chr5:7602091 | Sed06g0083 | Sed-Chr6:477339 | 2.70E-88 | dispersed | |
Sed05g2060 | Sed-Chr5:33849322 | Sed06g0083 | Sed-Chr6:477339 | 2.10E-88 | dispersed | |
Sed06g0083 | Sed-Chr6:477339 | Sed06g2223 | Sed-Chr6:45918264 | 1.30E-142 | dispersed | |
Sed06g0083 | Sed-Chr6:477339 | Sed06g2222 | Sed-Chr6:45918264 | 1.90E-178 | wgd | |
Sed06g0083 | Sed-Chr6:477339 | Sed07g1321 | Sed-Chr7:10092360 | 5.20E-96 | wgd | |
Sed06g0083 | Sed-Chr6:477339 | Sed09g1680 | Sed-Chr9:40159673 | 2.30E-96 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
38781 | PF00096 | zf-C2H2 | 0.0046 | CL0361 | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed06g0083 | K25870 | - | csv:101204728 | 559.296 |