Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g0083 ATGATAAAAAGTTTGTTATTTCAACAACAAGCTCAAGCTCAAGCTATGGAAGAAAATTTGTCGAATTTAACTTCACCTTCTGGTGAAGCTAGTAGCTGCTCCGGCAACCATTCCGATCAGATTCCGGCGAACTATGCCGGCAGCCAGTATTTTTCTGCCCCACCACCACCAAAAAAGAAGAGAAACCTCCCCGGAAATCCAGACCCGGATGCGGAAGTGATAGCGTTATCGCCGAAGACGCTAATGGCGACGAATAGATTCGTATGCGAGATATGCAACAAGGGGTTTCAAAGGGATCAAAATCTTCAACTTCATAGAAGAGGGCACAATTTGCCATGGAAATTGAAGCAAAGAGAAAACAAAGAAGTGATAAGGAAGAAAGTTTATGTGTGTCCAGAAACAAGTTGTGTTCATCATGATCCAACAAGGGCACTTGGGGATTTGACTGGAATTAAAAAGCACTTTTGTAGAAAACATGGTGAGAAGAAATGGAAATGTGACAAATGCTCTAAGAAATATGCAGTTCAATCTGATTGGAAAGCACATTCTAAGACTTGTGGCACTAGAGAGTACAGATGTGACTGTGGAACTCTTTTCTCAAGGAGGGACAGTTTCATAACCCACAGAGCTTTTTGTGATGCTTTAGCAGAGGAAAGTGCAAGAACCAATACATCAAACCCAATACTTATGACCAATAATAATAATAATATTAATATTAATAATCAAAACCCTCCACTAATTAATTCCCCTCCCAATAATATTTCTTCAATCTCTCACTTAAACTTCCAATCTCAATCCCAATCCCATTTCAATCCTTTAGATATCACCTCATTTAATTCCCTCAAAAAAGGAAACTCATCCAATTTCCTTCCCACATGGCTCCCTTGCCCTTCAAGATCATCATTAAATCATAATAATCAAAATCAAGACCTTAATCCCATAATTAACAACCCTAATCATCATCCTCTAATTCCAATTAGTGTTAATTCTCCACACATGTCAGCCACAGCACTTCTCCAAAAAGCAGCTCAAATGGGAGCTGCTGCCATGAGCAATGATGAACCCCACGTGCCTGACTCTCCTGCCTCACGTGACAATCATCAGATTTTGATGGGAATTTCTCAAACCACTTTTTCTCCCAGTGCTTTTGAAGGGGCCTCTTTTGAATTAGGTGCATTTGGAGGGGTATTTAAGAAAGATGAGATTTTTAATGAGAATTCAAGTGAAGGGTTGAGCACAAGAGATTTCTTGGGGCTTAGAGCAATTTCTCATAGTGAGTTTTTGAGTAATATTGCAGCTGCTGGTAATTATGGTAATTGCATCAATGGAGCTGCTGGTCAAAGTTCTCAAAGTCAAATTAAAAATCAAACCAGCTGGCAAGGTTAG 1386 39.61 MIKSLLFQQQAQAQAMEENLSNLTSPSGEASSCSGNHSDQIPANYAGSQYFSAPPPPKKKRNLPGNPDPDAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRENKEVIRKKVYVCPETSCVHHDPTRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAEESARTNTSNPILMTNNNNNININNQNPPLINSPPNNISSISHLNFQSQSQSHFNPLDITSFNSLKKGNSSNFLPTWLPCPSRSSLNHNNQNQDLNPIINNPNHHPLIPISVNSPHMSATALLQKAAQMGAAAMSNDEPHVPDSPASRDNHQILMGISQTTFSPSAFEGASFELGAFGGVFKKDEIFNENSSEGLSTRDFLGLRAISHSEFLSNIAAAGNYGNCINGAAGQSSQSQIKNQTSWQG 461
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 477339 480875 + Sed0013448.1 Sed06g0083 716626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g0083 461 Gene3D Classic Zinc Finger 142 222 - -
Sed06g0083 461 SMART c2h2final6 164 184 IPR013087 -
Sed06g0083 461 SMART c2h2final6 129 159 IPR013087 -
Sed06g0083 461 SMART c2h2final6 87 109 IPR013087 -
Sed06g0083 461 Pfam Zinc finger, C2H2 type 87 109 IPR013087 -
Sed06g0083 461 MobiDBLite consensus disorder prediction 17 47 - -
Sed06g0083 461 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 125 159 - -
Sed06g0083 461 Gene3D Classic Zinc Finger 66 138 - -
Sed06g0083 461 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 163 187 - -
Sed06g0083 461 ProSiteProfiles Zinc finger C2H2 type domain profile. 87 109 IPR013087 -
Sed06g0083 461 FunFam protein indeterminate-domain 5, chloroplastic-like 142 221 - -
Sed06g0083 461 SUPERFAMILY beta-beta-alpha zinc fingers 86 184 IPR036236 -
Sed06g0083 461 ProSitePatterns Zinc finger C2H2 type domain signature. 89 109 IPR013087 -
Sed06g0083 461 FunFam protein indeterminate-domain 12-like 66 135 - -
Sed06g0083 461 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 190 226 - -
Sed06g0083 461 MobiDBLite consensus disorder prediction 17 71 - -
Sed06g0083 461 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 41 432 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g1353 Sed-Chr4:27859027 Sed06g0083 Sed-Chr6:477339 4.90E-82 dispersed
Sed04g1354 Sed-Chr4:27859027 Sed06g0083 Sed-Chr6:477339 5.20E-82 dispersed
Sed05g0941 Sed-Chr5:7602091 Sed06g0083 Sed-Chr6:477339 2.70E-88 dispersed
Sed05g2060 Sed-Chr5:33849322 Sed06g0083 Sed-Chr6:477339 2.10E-88 dispersed
Sed06g0083 Sed-Chr6:477339 Sed06g2223 Sed-Chr6:45918264 1.30E-142 dispersed
Sed06g0083 Sed-Chr6:477339 Sed06g2222 Sed-Chr6:45918264 1.90E-178 wgd
Sed06g0083 Sed-Chr6:477339 Sed07g1321 Sed-Chr7:10092360 5.20E-96 wgd
Sed06g0083 Sed-Chr6:477339 Sed09g1680 Sed-Chr9:40159673 2.30E-96 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38781 PF00096 zf-C2H2 0.0046 CL0361 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g0083 K25870 - csv:101204728 559.296