Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g0086 ATGGATTATTCTTTGTGGATTTTTGTGCAGCTCATCACAGCTTCAGCTTTGATCATAATATCTTCCACAATCATAATCCTCAAAACCTTCAAGCCCTACTCTTCCATCTCCTCCAACACTTCCCTTCCTTCGGGCTCCCTCGGCCTCCCCTTCGTCGGCGAAACCCTACGGTTCGTTGCTTCTGCTTACTCCCCTCGCCCCGAAAGCTTCATGGACAAACGTCGCCTTCGGTATGGAAAGGTTTTCAAGTCCCATTTATTTGGAAGCCCAACAATTGTTTCAACAGATGGTGAAGTGAATAGGTTTATTCTACAAAGTGATGCAAAGGCTTTTGTGTCATCTTATCCAAAGTCTTTGAATGAATTGATGGGGAAATCTTCTATTTTGCTCATAAATGGCCCTTTACATAAGAAAATTCATGGTCTTATTGGAGCATTCTTCAAGTCATCTCATCTCAAAGCTCAATTAACCATAGACATGCAAAAATATCTTCAAAACTCCATCTCAATTTGGAGTACTTGTCAACACAATCCTATCCACATACAAGATGAAGCCAAAAATGCCAAAAGGAAAATGGTTAAATTTGTGGAGGAAATTATACAAGCTAGAAGATTGAAGATGAGAGAAAATAATTTGAATAATATTAGAGTCCCAAATGATGTTGTGGATGCTTTGTTGAATGATGGAAGCCAACAAGTTACAAATGAATTAATAGCTGAAAACATGATTGATATGATGATTCCAGGCCATGATTCAGTCCCAATCCTCATAAGTTTGGCTACAAAATACCTTTCTGATTGCCCTTCAGCTCTTCATCAATTAGTGGAAGAAAACATGGAGTTGAAAAGACTGAAAAATCAGGTTGGAGAGGCATTGAAGTGGAATGATTACCTATCCTTACCATTTACACAAAATGTCATATCGGAGACATTAAGGATGGGAAACGTTATAACAGGAGTGATGAGAAAGGCCATGAAAGACATTGAGATAAAAGGGTATTTAATACCTAAAGGATGGAGTGTCCTTGTATATTTTAGGTCAGTTCATCTTGATGAAAATCACTTTGAAAGCCCTTACCATTTCAATCCATGGAGGTGGCAAAATAAAGACTCAAACAACTCCAATTTCACTCCTTTTGGAGGGGGATTAAGGTTATGTCCTGGACTTGACTTGGCTAGATTGGAAGCTTCCATTTTCTTGCACCACTTTGTCACTCAATTCAGGTGGGTGGCTGAAGATGACAGTATTATCAACTTCCCAACAGTAAGAATGAAGAATAGAATGACAGTTTGGGTAAAGAAGAGAGAGGATAATTGTTTGAGAGACCCACTTTAA 1335 38.73 MDYSLWIFVQLITASALIIISSTIIILKTFKPYSSISSNTSLPSGSLGLPFVGETLRFVASAYSPRPESFMDKRRLRYGKVFKSHLFGSPTIVSTDGEVNRFILQSDAKAFVSSYPKSLNELMGKSSILLINGPLHKKIHGLIGAFFKSSHLKAQLTIDMQKYLQNSISIWSTCQHNPIHIQDEAKNAKRKMVKFVEEIIQARRLKMRENNLNNIRVPNDVVDALLNDGSQQVTNELIAENMIDMMIPGHDSVPILISLATKYLSDCPSALHQLVEENMELKRLKNQVGEALKWNDYLSLPFTQNVISETLRMGNVITGVMRKAMKDIEIKGYLIPKGWSVLVYFRSVHLDENHFESPYHFNPWRWQNKDSNNSNFTPFGGGLRLCPGLDLARLEASIFLHHFVTQFRWVAEDDSIINFPTVRMKNRMTVWVKKREDNCLRDPL 444
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 528307 535750 + Sed0024687.1 Sed06g0086 716629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g0086 444 CDD CYP90-like 74 428 - -
Sed06g0086 444 SUPERFAMILY Cytochrome P450 37 435 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed06g0086 444 Gene3D Cytochrome P450 33 435 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed06g0086 444 PRINTS E-class P450 group I signature 376 386 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed06g0086 444 PRINTS E-class P450 group I signature 386 409 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed06g0086 444 PRINTS E-class P450 group I signature 304 322 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed06g0086 444 PRINTS E-class P450 group I signature 75 94 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed06g0086 444 PRINTS E-class P450 group I signature 344 368 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed06g0086 444 PANTHER CYTOCHROME P450 26 185 411 - GO:0004497(PANTHER)|GO:0007275(PANTHER)|GO:0010268(PANTHER)|GO:0016125(PANTHER)|GO:0016132(PANTHER)|GO:0016491(PANTHER)|GO:0016709(PANTHER)
Sed06g0086 444 Pfam Cytochrome P450 160 415 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed06g0086 444 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 379 388 IPR017972 GO:0005506(InterPro)|GO:0016705(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g0086 Sed-Chr6:528307 Sed14g1163 Sed-Chr14:20979121 1.10E-108 dispersed
Sed06g0086 Sed-Chr6:528307 Sed09g1689 Sed-Chr9:40232290 1.90E-151 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g0086 K12638 - csv:101212581 658.292