Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g0088 ATGAATCGGGGAAAGCAGGACAAAGGCTCTGATGATGTCCAGAAGGTGATTGTTGCAGTGAAAGCTTCCAAAGAAATTCCTAAAACAGCTCTTGTTTGGGCATTGACTCATGTTGTTCAAATTGGAGATTGCATAACTCTGTTGGTTGTTGTCCCTTCTCAAAGCTCTGGTAGAAAATTCTGGGGTTTTCCGAGATTTGCTGGTGACTGTGCAAGCAGTCACAAGAAAGCTCTCACTGGAACAAGCTCAGAGCTGAAATGTGATATTACCGATACCTGCTCGCAGATGATCCTTCAGCTTCATGATGTTTATGATCCAAACAAGATAAATGTGAAAATTAAGATTGTTTCGGGGTCGCCTAGTGGGGCTGTAGCTGCAGAGTCGAAGAGAGCTCAAGCTAGCTGGGTTGTATTAGACAAACAGCTCAAACACGAGGAGAAATGTTGCATGGAAGAGTTAATATGCAACATTGTGGTAATGAAGCGATCTCAACCGAAAGTTCTTCGTTTGAACCTGGTTGGGTCTTCAAAGAAGGAAACAGAAGTGCTATCTCCCTTACCTTCTGATAATGAAGAAGGGTCTGAAAGCCATCGAAAGGAAAATGACGATCCTCTCGATTTCATCCGGGGACCCGTCGTGACCCCCAGCAGTAGTCCAGAGCTGGGGACACCTTTTACTGCAACCGAAGCTGGAACATCGTCAGTGTCAAGCTCAGATCCTGGGACTTCACCATTTTTCAACTCTGAAATGAATGGAGACTCAAAGAAAGAGGAATTGTTTGTTATCAAGGAGAATAAAGAACTGGATGCTGCTAGTTCAGGCTCAGATATTGATAACTTATCTGTATCGTCGGGTAGCTTGAGATTCCAACCATGGATGACAGAGTATCTAAGTTCTAATTTTCAATCATCACAACATGTTAGTGGAAGGTCACAGAGATTTGATGATAGGAGTCAAATGTCAACAAGAAAATCTTTTCTGTCAAACTCTTCCAAACTTGATAGAGAATCTAGTATTGGAATGTCAAGCCATAGAAGCGACAGCGATTTCCATGGGGATGTACGAGATGCAGTTTCATTATCCAGGAACTCGCCACCGGGCCCCCCTCCGTTATGTTCAATATGTCAACACAAGGCACCAGTTTTTGGCAAGCCTCCAAGGTGGTTCAGCTATGCGGAGCTCGAGCTCGCTACGGGTGGCTTTTCACAAGCCAACTTTTTGGCAGAGGGAGGATATGGATCTGTTCATAGAGGGGTACTCCCAGATGGACAGGTGGTCGCTGTCAAGCAGCACAAACTAGCTAGTTCTCAGGGAGACCTTGAATTTTGTTCGGAAGTCGAAGTTCTTAGCTGTGCGCAGCATCGAAATGTTGTTATGTTGATTGGCTTTTGTATAGAGGAGAAAAGAAGGTTGCTGGTTTATGAATACATCTGCAATGGTTCATTGGATTCTCATTTATATGGACGTCAACGAGAGCCATTAGAATGGTCTGCACGGCAAAAAGTTGCAGTGGGAGCTGCACGGGGGCTACGATATCTCCACGAGGAATGTAGAGTGGGTTGCATCGTTCATCGGGATATGCGACCGAACAACATTCTTATCACCCATGATTTTGAACCACTGGTTGGAGATTTTGGCCTTGCAAGGTGGCAGCCAGACGGAGATACCGGGGTCGAGACGAGAGTTATTGGAACATTTGGGTATTTGGCTCCAGAGTATGCTCAAAGTGGCCAAATCACAGAGAAAGCTGATGTCTATTCCTTTGGGGTAGTACTGGTGGAGCTAATTACTGGAAGAAAAGCCGTGGACCTTAGTCGACCGAAAGGTCAACAATGTCTCACTGAATGGGCACGCCCCCTGTTGGATGAACTTGTCATTGATGAACTGATCGATCCAAGGTTGGGAAATAGTTTCATGGAGCACGAGGTGTACTGCATGCTGCACGCCGCATCGTTATGCATCCGAAGAGATCCTAATGCAAGGCCTCGTATGTCACAGGTTTTACGGATTCTGGAGGGCGACCTCGTCATGGATGCTAATTACCTATCAACTCCTGGATACGATGTGGGAAGTCGGAGTGGTCGGATGTGGACTGAGCAGCAGCAGCATAACTACAGTGGCTCCTTATCAGAAGAGACCCTAGAAAGGTTCAATGAAAAGATCTCTCTTGAGGGCTTAAGACCAAGCTACTGGGAAAGGGACAATACAAGGAGGACTTCAAGTGGAAGTGGTTTGTAA 2238 45.76 MNRGKQDKGSDDVQKVIVAVKASKEIPKTALVWALTHVVQIGDCITLLVVVPSQSSGRKFWGFPRFAGDCASSHKKALTGTSSELKCDITDTCSQMILQLHDVYDPNKINVKIKIVSGSPSGAVAAESKRAQASWVVLDKQLKHEEKCCMEELICNIVVMKRSQPKVLRLNLVGSSKKETEVLSPLPSDNEEGSESHRKENDDPLDFIRGPVVTPSSSPELGTPFTATEAGTSSVSSSDPGTSPFFNSEMNGDSKKEELFVIKENKELDAASSGSDIDNLSVSSGSLRFQPWMTEYLSSNFQSSQHVSGRSQRFDDRSQMSTRKSFLSNSSKLDRESSIGMSSHRSDSDFHGDVRDAVSLSRNSPPGPPPLCSICQHKAPVFGKPPRWFSYAELELATGGFSQANFLAEGGYGSVHRGVLPDGQVVAVKQHKLASSQGDLEFCSEVEVLSCAQHRNVVMLIGFCIEEKRRLLVYEYICNGSLDSHLYGRQREPLEWSARQKVAVGAARGLRYLHEECRVGCIVHRDMRPNNILITHDFEPLVGDFGLARWQPDGDTGVETRVIGTFGYLAPEYAQSGQITEKADVYSFGVVLVELITGRKAVDLSRPKGQQCLTEWARPLLDELVIDELIDPRLGNSFMEHEVYCMLHAASLCIRRDPNARPRMSQVLRILEGDLVMDANYLSTPGYDVGSRSGRMWTEQQQHNYSGSLSEETLERFNEKISLEGLRPSYWERDNTRRTSSGSGL 745
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 549039 554934 - Sed0004498.1 Sed06g0088 716631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g0088 745 MobiDBLite consensus disorder prediction 179 251 - -
Sed06g0088 745 Gene3D Phosphorylase Kinase; domain 1 373 476 - -
Sed06g0088 745 MobiDBLite consensus disorder prediction 321 337 - -
Sed06g0088 745 MobiDBLite consensus disorder prediction 191 206 - -
Sed06g0088 745 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 477 680 - -
Sed06g0088 745 FunFam Dual-specific kinase DSK1-like 7 161 - -
Sed06g0088 745 CDD STKc_IRAK 407 673 - -
Sed06g0088 745 SUPERFAMILY Protein kinase-like (PK-like) 385 683 IPR011009 -
Sed06g0088 745 MobiDBLite consensus disorder prediction 216 250 - -
Sed06g0088 745 Gene3D Transferase(Phosphotransferase) domain 1 477 681 - -
Sed06g0088 745 MobiDBLite consensus disorder prediction 304 352 - -
Sed06g0088 745 ProSiteProfiles Protein kinase domain profile. 401 682 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed06g0088 745 MobiDBLite consensus disorder prediction 338 352 - -
Sed06g0088 745 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 373 476 - -
Sed06g0088 745 Pfam Protein tyrosine and serine/threonine kinase 405 670 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed06g0088 745 ProSitePatterns Tyrosine protein kinases specific active-site signature. 522 534 IPR008266 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed06g0088 745 PANTHER OS01G0750732 PROTEIN 276 685 IPR050885 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g0088 Sed-Chr6:549039 Sed06g2214 Sed-Chr6:45811306 0.00E+00 dispersed
Sed06g0088 Sed-Chr6:549039 Sed06g0089 Sed-Chr6:549039 0.00E+00 tandem
Sed01g0948 Sed-Chr1:7015752 Sed06g0088 Sed-Chr6:549039 7.50E-84 transposed
Sed06g0088 Sed-Chr6:549039 Sed06g2213 Sed-Chr6:45811306 0.00E+00 wgd
Sed06g0088 Sed-Chr6:549039 Sed07g1324 Sed-Chr7:10123823 1.30E-67 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79315 PF07714 PK_Tyr_Ser-Thr 1.50E-40 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g0088 - - - 0.0