Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g0090 ATGAATCGGGGAAAGCAGGACAAAGGCTCTGATGATGTCCAGAAGGTGATTGTTGCAGTGAAAGCTTCCAAAGAAATTCCTAAAACAGCTCTTGTTTGGGCATTGACTCATGTTGTTCAAATTGGAGATTGCATAACTCTGTTGGTTGTTGTCCCTTCTCAAAGCTCTGGTAGAAAATTCTGGGGTTTTCCGAGATTTGCTGGTGACTGTGCAAGCAGTCACAAGAAAGCTCTCACTGGAACAAGCTCAGAGCTGAAATGTGATATTACCGATACCTGCTCGCAGATGATCCTTCAGCTTCATGATGTTTATGATCCAAACAAGATAAATGTGAAAATTAAGATTGTTTCGGGGTCGCCTAGTGGGGCTGTAGCTGCAGAGTCGAAGAGAGCTCAAGCTAGCTGGGTTGTATTAGACAAACAGCTCAAACACGAGGAGAAATGTTGCATGGAAGAGTTAATATGCAACATTGTGGTAATGAAGCGATCTCAACCGAAAGTTCTTCGTTTGAACCTGGTTGGGTCTTCAAAGAAGGAAACAGAAGTGCTATCTCCCTTACCTTCTGATAATGAAGAAGGGTCTGAAAGCCATCGAAAGGAAAATGACGATCCTCTCGATTTCATCCGGGGACCCGTCGTGACCCCCAGCAGTAGTCCAGAGCTGGGGACACCTTTTACTGCAACCGAAGCTGGAACATCGTCAGTGTCAAGCTCAGATCCTGGGACTTCACCATTTTTCAACTCTGAAATGAATGGAGACTCAAAGAAAGAGGAATTGTTTGTTATCAAGGAGAATAAAGAACTGGATGCTGCTAGTTCAGGCTCAGATATTGATAACTTATCTGTATCGTCGGGTAGCTTGAGATTCCAACCATGGATGACAGAGTATCTAAGTTCTAATTTTCAATCATCACAACATGTTAGTGGAAGGTCACAGAGATTTGATGATAGGAGTCAAATGTCAACAAGAAAATCTTTTCTGTCAAACTCTTCCAAACTTGATAGAGAATCTAGTATTGGAATGTCAAGCCATAGAAGCGACAGCGATTTCCATGGGGATGTACGAGATGCAGTTTCATTATCCAGGAACTCGCCACCGGGCCCCCCTCCGTTATGTTCAATATGTCAACACAAGGCACCAGTTTTTGGCAAGCCTCCAAGGTGGTTCAGCTATGCGGAGCTCGAGCTCGCTACGGGTGGCTTTTCACAAGCCAACTTTTTGGCAGAGGGAGGATATGGATCTGTTCATAGAGGGGTACTCCCAGATGGACAGGTGGTCGCTGTCAAGCAGCACAAACTAGCTAGTTCTCAGGGAGACCTTGAATTTTGTTCGGAAGTCGAAGTTCTTAGCTGTGCGCAGCATCGAAATGTTGTTATGTTGATTGGCTTTTGTATAGAGGAGAAAAGAAGGTTGCTGGTTTATGAATACATCTGCAATGGTTCATTGGATTCTCATTTATATGGACGTCAACGAGAGCCATTAGAATGGTCTGCACGGCAAAAAGTTGCAGTGGGAGCTGCACGGGGGCTACGATATCTCCACGAGGAATGTAGAGTGGGTTGCATCGTTCATCGGGATATGCGACCGAACAACATTCTTATCACCCATGATTTTGAACCACTGGTTGGAGATTTTGGCCTTGCAAGGTGGCAGCCAGACGGAGATACCGGGGTCGAGACGAGAGTTATTGGAACATTTGGGTATTTGGCTCCAGAGTATGCTCAAAGTGGCCAAATCACAGAGAAAGCTGATGTCTATTCCTTTGGGGTAGTACTGGTGGAGCTAATTACTGGAAGAAAAGCCGTGGACCTTAGTCGACCGAAAGGTCAACAATGTCTCACTGAATGGGTATGA 1854 45.09 MNRGKQDKGSDDVQKVIVAVKASKEIPKTALVWALTHVVQIGDCITLLVVVPSQSSGRKFWGFPRFAGDCASSHKKALTGTSSELKCDITDTCSQMILQLHDVYDPNKINVKIKIVSGSPSGAVAAESKRAQASWVVLDKQLKHEEKCCMEELICNIVVMKRSQPKVLRLNLVGSSKKETEVLSPLPSDNEEGSESHRKENDDPLDFIRGPVVTPSSSPELGTPFTATEAGTSSVSSSDPGTSPFFNSEMNGDSKKEELFVIKENKELDAASSGSDIDNLSVSSGSLRFQPWMTEYLSSNFQSSQHVSGRSQRFDDRSQMSTRKSFLSNSSKLDRESSIGMSSHRSDSDFHGDVRDAVSLSRNSPPGPPPLCSICQHKAPVFGKPPRWFSYAELELATGGFSQANFLAEGGYGSVHRGVLPDGQVVAVKQHKLASSQGDLEFCSEVEVLSCAQHRNVVMLIGFCIEEKRRLLVYEYICNGSLDSHLYGRQREPLEWSARQKVAVGAARGLRYLHEECRVGCIVHRDMRPNNILITHDFEPLVGDFGLARWQPDGDTGVETRVIGTFGYLAPEYAQSGQITEKADVYSFGVVLVELITGRKAVDLSRPKGQQCLTEWV 617
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 549039 554934 - Sed0004498.3 Sed06g0090 716633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g0090 617 MobiDBLite consensus disorder prediction 179 251 - -
Sed06g0090 617 MobiDBLite consensus disorder prediction 321 337 - -
Sed06g0090 617 MobiDBLite consensus disorder prediction 191 206 - -
Sed06g0090 617 Gene3D HUPs 2 148 IPR014729 -
Sed06g0090 617 Pfam Protein tyrosine and serine/threonine kinase 405 600 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed06g0090 617 Gene3D Transferase(Phosphotransferase) domain 1 477 617 - -
Sed06g0090 617 Gene3D Phosphorylase Kinase; domain 1 373 476 - -
Sed06g0090 617 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 373 476 - -
Sed06g0090 617 FunFam Dual-specific kinase DSK1-like 7 161 - -
Sed06g0090 617 PANTHER OS01G0750732 PROTEIN 276 616 IPR050885 -
Sed06g0090 617 MobiDBLite consensus disorder prediction 216 250 - -
Sed06g0090 617 ProSiteProfiles Protein kinase domain profile. 401 617 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed06g0090 617 MobiDBLite consensus disorder prediction 304 352 - -
Sed06g0090 617 MobiDBLite consensus disorder prediction 338 352 - -
Sed06g0090 617 SUPERFAMILY Protein kinase-like (PK-like) 386 603 IPR011009 -
Sed06g0090 617 ProSitePatterns Tyrosine protein kinases specific active-site signature. 522 534 IPR008266 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g0090 Sed-Chr6:549039 Sed06g2213 Sed-Chr6:45811306 0.00E+00 dispersed
Sed06g0089 Sed-Chr6:549039 Sed06g0090 Sed-Chr6:549039 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79317 PF07714 PK_Tyr_Ser-Thr 1.60E-39 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g0090 - - - 0.0