Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g0114 ATGGCAACTCTCCAATTCTTCTTCTTCTTCGCTCTTCTCTCCAGCTTTGCTCTCAACAATTTCGCTTCTGCACAAAATCCTACAGGCTTCATCAGTTTAGACTGTGGAATTCCAGCAAACTCCACATACACAGATCCAAACACCGGAATCACCTACGAATCCGACGCAGCCTTCATAAACTCCGGCAAAATCCACAACATCTCCGCGGGTAGCGAGAGCGAGGATCGACCGCTGCAGACTCTTCGGAGCTTCCCCGAAGGGACAAGAAACTGCTACAAGTTAAAGGTGAGGATAGGGACAAAGTACTTGATCCGAGCTGCGTTTCGGTACGGGAACTACGACGGGCGTAATAGTCTGCCGGGATTCGATCTGCATTTCGGAGCGAGTTTGTGGGATTCGGTTGCGTTTAACGGAGACTTCGCGGTGCGTAAGGAGATTGTTCATGTTGTTTTGAGCAGTGAGTTGAGGATTTGTGTTGTGAACGTTGGAACTGGAACCCCGTTTGTTTCAGCTTTGGAATTGAGGCCGTTAAGAGACTCTGCTTATGAAGCGGGAAACTTGACTTTGGCTAACTTTGCAAGGCTTGATTATGGCTCTCTTGATAATATGACTATCAGGTACAAAGACGACGTGTACGATAGAATCTGGGAAGCAGGGGAACCATCGCAAGGATGGAAAACCCTAAACACCACGGACCCAATCGCCGTCAACGACCCGCTCTTCTTCCAGGCGCCAGTGCCGGTGATGCACACGGCGGCGACGCCAAGAAACGCCACCGCGTCGATGGATCTCACGTGGCGGGCCGCGGACTCCACGGCGGCGTTTTTCCTGTACCTGTATTTCGCAGAGGTGGATCTGCTTCAAGCGAACGAGTCCAGAGAGTTCGACATATTTCTGAACGGAGATCGGTGGCTGAACGAGTCGTTTTCGCCGGTTCATTTGGCCGGATCTGTTGTCTTCAGTACCTCGCCTTTGGTTGGGGAAAACCACCGGATCTCTCTCGTCCGAACTGCAAACTCTACTCTTCCGCCGATTCTGAACGGCCTCGAGATCTATCGTGTGGTTAATTTCTCGCAACCGGAGACTGATGCTGCTGATGTTGCTGCCATCGAAAATATCAACACAATTTATGGAGTTGGAAGAAACTGGGAAGGAGATCCTTGTTCCCCTAGGAGTTTAATTTGGCAAGGACTCAACTGTAGCTTTCTGAATTCTCAGCCTCCCAGAATCACATCCTTGGATTTGTCCTCCGGTGGATTGACAGGGGAAATACCTAGAGACATAGCAAATCTTAAAATGCTGGAGATTCTAGATTTATCAAACAATAGTTTGAGCGGATCAGTGCCTGAATTTCTCACTCAACTGCCATTGTTGCGAGTCCTAAACTTGGAAAAAAACAGTTTTTCAGGATTAATTCCAGCTCAGCTCGTAGAGAAATCCAATAATGGCTCTCTGTTATTAAGATTTGGCGATAATCCTAATTTGTTTACTACGACTCCCAAAAAGAAGGGAAACAATGTTGTTGCTACTGTATTAGGATCAGTTGTTGGATTTCTTCTGCTTTTGTTCATGATTGCAGCATATATCTATTGGACAAAAAGAAGAAAATCAAAAGGAGCTGTAATTGGAGTGGGGAAACGAACCGTTGACCTTTCGGAAAATTTGGACACGACTAAGAGATGCTATTCGTACTCGGATGTCCTAAGAATGACAAACAATTTCGAGCATATGCTTGGAGAAGGTGGCTTTGGACGAGTTTACTATGGAAAGATTGTAAACGTTGAAGTAGCTGTTAAAATGCTATCTCCTCGATCAGTTCAAGGATATCAACAGTTTCAAGCAGAGGTTGACCTTCTTATGAGAGTTCATCATAGAAACTTGACTGGTCTGGTTGGGTATTGCAATGAACCGAGCAACAAAGGACTTATCTATGAGTACATGAGCAGAGGAAACTTGGGATCTCTCATGTCAGATGGCAACTCAGCTTTGTTGAATTGGGAAGACAGACTTCATATAGCAGTGGATGCAGCACAAGGATTGCAATACTTGCATTCTGGTATAAAGCCAGCTATTGTACATAGAGATGTAAAATCTTCCAACATCTTACTGGATGAGAACTTTCGAGCAAAAGTATCTGATTTTGGATTATCGAGAATCTTTCCCGTCGATGATGGTGCCACTCACGTGACAACGAATGTGGTTGGCACACCTGGCTACCTCGACCCCGAATACTACACATCTTATAGATTAAATGAGAAAAGCGACGTTTATGGCTTTGGAATTGTACTCTTAGAAATCATAACTGGAAGACCAGTTTTGACCAAGACTTCAGACAAGGTAACTCACATCTATCATTGGGTCGAATCGATGCTTTCTCAAGGTGATATCAGCTCGATTATCGACCCAAAACTGAAAGAAGATTTCTCCTTGAACGCCATTTGGAAAGCGGTTGAAATTGCAATGTCGTGTGCATCGCTGGCCTCTACGAATAGGCCAACCATGAGCCAAGTTGTAATAGATTTGAATGGCTGTTTGAATATGGAGTTAGCTCAAGATACCAACAATCACCAGCCTGAATCAGTTATTGAAGATGAAATTTCTCTGTTTGGTCCTGAAGCTAGGTAG 2625 45.14 MATLQFFFFFALLSSFALNNFASAQNPTGFISLDCGIPANSTYTDPNTGITYESDAAFINSGKIHNISAGSESEDRPLQTLRSFPEGTRNCYKLKVRIGTKYLIRAAFRYGNYDGRNSLPGFDLHFGASLWDSVAFNGDFAVRKEIVHVVLSSELRICVVNVGTGTPFVSALELRPLRDSAYEAGNLTLANFARLDYGSLDNMTIRYKDDVYDRIWEAGEPSQGWKTLNTTDPIAVNDPLFFQAPVPVMHTAATPRNATASMDLTWRAADSTAAFFLYLYFAEVDLLQANESREFDIFLNGDRWLNESFSPVHLAGSVVFSTSPLVGENHRISLVRTANSTLPPILNGLEIYRVVNFSQPETDAADVAAIENINTIYGVGRNWEGDPCSPRSLIWQGLNCSFLNSQPPRITSLDLSSGGLTGEIPRDIANLKMLEILDLSNNSLSGSVPEFLTQLPLLRVLNLEKNSFSGLIPAQLVEKSNNGSLLLRFGDNPNLFTTTPKKKGNNVVATVLGSVVGFLLLLFMIAAYIYWTKRRKSKGAVIGVGKRTVDLSENLDTTKRCYSYSDVLRMTNNFEHMLGEGGFGRVYYGKIVNVEVAVKMLSPRSVQGYQQFQAEVDLLMRVHHRNLTGLVGYCNEPSNKGLIYEYMSRGNLGSLMSDGNSALLNWEDRLHIAVDAAQGLQYLHSGIKPAIVHRDVKSSNILLDENFRAKVSDFGLSRIFPVDDGATHVTTNVVGTPGYLDPEYYTSYRLNEKSDVYGFGIVLLEIITGRPVLTKTSDKVTHIYHWVESMLSQGDISSIIDPKLKEDFSLNAIWKAVEIAMSCASLASTNRPTMSQVVIDLNGCLNMELAQDTNNHQPESVIEDEISLFGPEAR 874
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 734630 742503 - Sed0026300.1 Sed06g0114 716657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g0114 874 SUPERFAMILY Protein kinase-like (PK-like) 556 841 IPR011009 -
Sed06g0114 874 FunFam Leucine-rich repeat receptor-like protein kinase 550 646 - -
Sed06g0114 874 Gene3D Transferase(Phosphotransferase) domain 1 647 867 - -
Sed06g0114 874 SMART serkin_6 572 815 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed06g0114 874 FunFam Leucine-rich repeat receptor-like kinase 365 498 - -
Sed06g0114 874 ProSitePatterns Serine/Threonine protein kinases active-site signature. 691 703 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed06g0114 874 Pfam Leucine rich repeat 408 467 IPR001611 GO:0005515(InterPro)
Sed06g0114 874 Gene3D - 193 355 - -
Sed06g0114 874 Pfam Malectin-like domain 33 354 IPR024788 -
Sed06g0114 874 ProSiteProfiles Protein kinase domain profile. 572 845 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed06g0114 874 Gene3D Ribonuclease Inhibitor 368 486 IPR032675 -
Sed06g0114 874 SUPERFAMILY L domain-like 369 478 - -
Sed06g0114 874 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 647 854 - -
Sed06g0114 874 Pfam Protein tyrosine and serine/threonine kinase 574 840 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed06g0114 874 PANTHER OS07G0107800 PROTEIN-RELATED 25 849 - -
Sed06g0114 874 Gene3D Phosphorylase Kinase; domain 1 547 646 - -
Sed06g0114 874 ProSitePatterns Protein kinases ATP-binding region signature. 578 599 IPR017441 GO:0005524(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g0541 Sed-Chr4:4018226 Sed06g0114 Sed-Chr6:734630 5.60E-118 dispersed
Sed06g0114 Sed-Chr6:734630 Sed06g0116 Sed-Chr6:744940 3.90E-270 dispersed
Sed06g0113 Sed-Chr6:713377 Sed06g0114 Sed-Chr6:734630 5.10E-225 tandem
Sed06g0114 Sed-Chr6:734630 Sed06g0115 Sed-Chr6:734630 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79321 PF12819 Malectin_like 9.20E-108 CL0202 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g0114 - - - 0.0