Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g0115 ATGCACACGGCGGCGACGCCAAGAAACGCCACCGCGTCGATGGATCTCACGTGGCGGGCCGCGGACTCCACGGCGGCGTTTTTCCTGTACCTGTATTTCGCAGAGGTGGATCTGCTTCAAGCGAACGAGTCCAGAGAGTTCGACATATTTCTGAACGGAGATCGGTGGCTGAACGAGTCGTTTTCGCCGGTTCATTTGGCCGGATCTGTTGTCTTCAGTACCTCGCCTTTGGTTGGGGAAAACCACCGGATCTCTCTCGTCCGAACTGCAAACTCTACTCTTCCGCCGATTCTGAACGGCCTCGAGATCTATCGTGTGGTTAATTTCTCGCAACCGGAGACTGATGCTGCTGATGTTGCTGCCATCGAAAATATCAACACAATTTATGGAGTTGGAAGAAACTGGGAAGGAGATCCTTGTTCCCCTAGGAGTTTAATTTGGCAAGGACTCAACTGTAGCTTTCTGAATTCTCAGCCTCCCAGAATCACATCCTTGGATTTGTCCTCCGGTGGATTGACAGGGGAAATACCTAGAGACATAGCAAATCTTAAAATGCTGGAGATTCTAGATTTATCAAACAATAGTTTGAGCGGATCAGTGCCTGAATTTCTCACTCAACTGCCATTGTTGCGAGTCCTAAACTTGGAAAAAAACAGTTTTTCAGGATTAATTCCAGCTCAGCTCGTAGAGAAATCCAATAATGGCTCTCTGTTATTAAGATTTGGCGATAATCCTAATTTGTTTACTACGACTCCCAAAAAGAAGGGAAACAATGTTGTTGCTACTGTATTAGGATCAGTTGTTGGATTTCTTCTGCTTTTGTTCATGATTGCAGCATATATCTATTGGACAAAAAGAAGAAAATCAAAAGGAGCTGTAATTGGAGTGGGGAAACGAACCGTTGACCTTTCGGAAAATTTGGACACGACTAAGAGATGCTATTCGTACTCGGATGTCCTAAGAATGACAAACAATTTCGAGCATATGCTTGGAGAAGGTGGCTTTGGACGAGTTTACTATGGAAAGATTGTAAACGTTGAAGTAGCTGTTAAAATGCTATCTCCTCGATCAGTTCAAGGATATCAACAGTTTCAAGCAGAGGTTGACCTTCTTATGAGAGTTCATCATAGAAACTTGACTGGTCTGGTTGGGTATTGCAATGAACCGAGCAACAAAGGACTTATCTATGAGTACATGAGCAGAGGAAACTTGGGATCTCTCATGTCAGATGGCAACTCAGCTTTGTTGAATTGGGAAGACAGACTTCATATAGCAGTGGATGCAGCACAAGGATTGCAATACTTGCATTCTGGTATAAAGCCAGCTATTGTACATAGAGATGTAAAATCTTCCAACATCTTACTGGATGAGAACTTTCGAGCAAAAGTATCTGATTTTGGATTATCGAGAATCTTTCCCGTCGATGATGGTGCCACTCACGTGACAACGAATGTGGTTGGCACACCTGGCTACCTCGACCCCGAATACTACACATCTTATAGATTAAATGAGAAAAGCGACGTTTATGGCTTTGGAATTGTACTCTTAGAAATCATAACTGGAAGACCAGTTTTGACCAAGACTTCAGACAAGGTAACTCACATCTATCATTGGGTCGAATCGATGCTTTCTCAAGGTGATATCAGCTCGATTATCGACCCAAAACTGAAAGAAGATTTCTCCTTGAACGCCATTTGGAAAGCGGTTGAAATTGCAATGTCGTGTGCATCGCTGGCCTCTACGAATAGGCCAACCATGAGCCAAGTTGTAATAGATTTGAATGGCTGTTTGAATATGGAGTTAGCTCAAGATACCAACAATCACCAGCCTGAATCAGTTATTGAAGATGAAATTTCTCTGTTTGGTCCTGAAGCTAGGTAG 1881 43.43 MHTAATPRNATASMDLTWRAADSTAAFFLYLYFAEVDLLQANESREFDIFLNGDRWLNESFSPVHLAGSVVFSTSPLVGENHRISLVRTANSTLPPILNGLEIYRVVNFSQPETDAADVAAIENINTIYGVGRNWEGDPCSPRSLIWQGLNCSFLNSQPPRITSLDLSSGGLTGEIPRDIANLKMLEILDLSNNSLSGSVPEFLTQLPLLRVLNLEKNSFSGLIPAQLVEKSNNGSLLLRFGDNPNLFTTTPKKKGNNVVATVLGSVVGFLLLLFMIAAYIYWTKRRKSKGAVIGVGKRTVDLSENLDTTKRCYSYSDVLRMTNNFEHMLGEGGFGRVYYGKIVNVEVAVKMLSPRSVQGYQQFQAEVDLLMRVHHRNLTGLVGYCNEPSNKGLIYEYMSRGNLGSLMSDGNSALLNWEDRLHIAVDAAQGLQYLHSGIKPAIVHRDVKSSNILLDENFRAKVSDFGLSRIFPVDDGATHVTTNVVGTPGYLDPEYYTSYRLNEKSDVYGFGIVLLEIITGRPVLTKTSDKVTHIYHWVESMLSQGDISSIIDPKLKEDFSLNAIWKAVEIAMSCASLASTNRPTMSQVVIDLNGCLNMELAQDTNNHQPESVIEDEISLFGPEAR 626
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 734630 740615 - Sed0026300.2 Sed06g0115 716658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g0115 626 SUPERFAMILY L domain-like 121 230 - -
Sed06g0115 626 Pfam Leucine rich repeat 160 219 IPR001611 GO:0005515(InterPro)
Sed06g0115 626 Gene3D Transferase(Phosphotransferase) domain 1 399 619 - -
Sed06g0115 626 ProSitePatterns Serine/Threonine protein kinases active-site signature. 443 455 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed06g0115 626 Pfam Protein tyrosine and serine/threonine kinase 326 592 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed06g0115 626 Gene3D Phosphorylase Kinase; domain 1 306 398 - -
Sed06g0115 626 SUPERFAMILY Protein kinase-like (PK-like) 307 593 IPR011009 -
Sed06g0115 626 SMART serkin_6 324 567 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed06g0115 626 ProSitePatterns Protein kinases ATP-binding region signature. 330 351 IPR017441 GO:0005524(InterPro)
Sed06g0115 626 FunFam Leucine-rich repeat receptor-like kinase 117 250 - -
Sed06g0115 626 PANTHER OS07G0107800 PROTEIN-RELATED 1 601 - -
Sed06g0115 626 Gene3D Ribonuclease Inhibitor 120 238 IPR032675 -
Sed06g0115 626 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 399 606 - -
Sed06g0115 626 Pfam Malectin-like domain 1 106 IPR024788 -
Sed06g0115 626 ProSiteProfiles Protein kinase domain profile. 324 597 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed06g0115 626 FunFam Leucine-rich repeat receptor-like protein kinase 302 398 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g0115 Sed-Chr6:734630 Sed06g2195 Sed-Chr6:45670362 5.60E-170 dispersed
Sed06g0114 Sed-Chr6:734630 Sed06g0115 Sed-Chr6:734630 0.00E+00 tandem
Sed06g0115 Sed-Chr6:734630 Sed06g0116 Sed-Chr6:744940 9.80E-191 tandem
Sed06g0115 Sed-Chr6:734630 Sed07g1392 Sed-Chr7:10675879 2.70E-108 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79322 PF07714 PK_Tyr_Ser-Thr 2.00E-44 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g0115 - - - 0.0