Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g0122 ATGGGTTGTGTTCTTGGCAAGTGTTGCACTTGTAGTCGCTACTCACGGTCTTCTAGTAGTGATATTGCTGAATCCTGTCATGCACCGCCATTTGATTTACAAGAGAAGCATACACTAACAGCAAGGTCATTGGAGTCTGTTCGTGTGCCTTCTCACGACTTCCATATGGTGTACTCGCACCTGACGCAGCGCGGCTACTACCCTGATTCCCCTGATAAAGATAACCAAGATAGCTTATGTGTTAGTACGCAAATTCGAGGTGACTCGGATGTCCATTTCTTTGGTGTTTTTGATGGGCATGGTCAATATGGATCGCAATGTTCAAATTTCGTTAAGGATCGGTTTGTGCAAATATTATGTAATGATTCAGCATTGTTAGAAGACCCTATTAAAGCTTATAATTCGGCATTTTTTACCACAAATGATGAATTGCATGATAGCGAGATCGATGATTCCATGAGTGGCACAACAGCTATTACTGCTCTTGTTGTTGGGAATACGCTTTATGTTGCGAATGTGGGTGATTCGAGGGCAATCATAGCTGTTAAAGATGGGGACCAAATTGTTGCTAAGGACATGTCTTATGATCAAACACCATTTAGGAAGGATGAGTTCGAGAGAGTAAAGCTTGCCGGGGCTAGGGTGTTGACAATTGATCAAATTGAAGGGCGTAAGGATCCAGATATTCAAATATGGGGTGACGAAGAGAGCGAGGGAAATGATCCACCTCGATTGTGGTTTCCAAATAGCTTGTTTCCTGGTACTGCATTTACACGGAGTATAGGAGATAACGCAGCTGAGAAAATTGGTGTTACTGCTGTTCCTGAGGTTTCAGTAGTTCAGCTTACTCAAAACCATCTTTTCTTTGTCATCGCAAGCGATGGAGTGTTCGAGTTCCTTACAAGTCAAGAAGTTGTTGACATGGCCGCAAAGTACCCAGATCCACGTGATGCGTGCTCTGCTATTGCTGGAGAGTCATACAAGCTATGGTTGGAGCAGGAAAACCGGACAGATGATATAACAATCATCGTCGTTCACATCAATGGCCTCTCTAATTTAGGTGCTAATTCAATCGCTGGGCTGAATGGTACCCACATAAGGCATACAAGTTCTGAGCGGGGAACTTCCGAGATATCAGGCTTCACTGGAAGTTCGGAGGCTTTTCGATCGGTCAGGAGCGATTTCTCGGATTCGCAAGTCTCGCAGCAAGTGGGTTTGATGAATAGGAGCACGCCAGTTGTCGTTTCATCTCTCGCGCAGCACCGACCATTGGAAGTGTTGTCTTCTATAATTTGTTTAGTGTATTGCTTGGAAACTTCATATTATATATATCATTTTCTGGTTACAGGAAGTTGGCTAGGATTCTGTCCCCACTGCCGAAAAAGTTGCTCGTTTCACTCGTATTCGCGAAGCGCTCTTACTGTCAATGTTGCTAGTAGTAATCCTTCTAACTTCAAGTGGCCAGAGTATGAGAAATCAATGATGTTTTCTATTGAATGGACTTCGTGGAAAGAAATTGACATGAAAAATGTAAATTCTCTCTTAATCTCTTGA 1554 43.18 MGCVLGKCCTCSRYSRSSSSDIAESCHAPPFDLQEKHTLTARSLESVRVPSHDFHMVYSHLTQRGYYPDSPDKDNQDSLCVSTQIRGDSDVHFFGVFDGHGQYGSQCSNFVKDRFVQILCNDSALLEDPIKAYNSAFFTTNDELHDSEIDDSMSGTTAITALVVGNTLYVANVGDSRAIIAVKDGDQIVAKDMSYDQTPFRKDEFERVKLAGARVLTIDQIEGRKDPDIQIWGDEESEGNDPPRLWFPNSLFPGTAFTRSIGDNAAEKIGVTAVPEVSVVQLTQNHLFFVIASDGVFEFLTSQEVVDMAAKYPDPRDACSAIAGESYKLWLEQENRTDDITIIVVHINGLSNLGANSIAGLNGTHIRHTSSERGTSEISGFTGSSEAFRSVRSDFSDSQVSQQVGLMNRSTPVVVSSLAQHRPLEVLSSIICLVYCLETSYYIYHFLVTGSWLGFCPHCRKSCSFHSYSRSALTVNVASSNPSNFKWPEYEKSMMFSIEWTSWKEIDMKNVNSLLIS 517
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 793915 797293 - Sed0021399.1 Sed06g0122 716665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g0122 517 Pfam Protein phosphatase 2C 82 319 IPR001932 -
Sed06g0122 517 SUPERFAMILY PP2C-like 45 350 IPR036457 -
Sed06g0122 517 Gene3D - 56 348 IPR036457 -
Sed06g0122 517 CDD PP2Cc 65 347 IPR001932 -
Sed06g0122 517 ProSitePatterns PPM-type phosphatase domain signature. 93 101 IPR000222 GO:0043169(InterPro)
Sed06g0122 517 SMART PP2C_4 34 345 IPR001932 -
Sed06g0122 517 FunFam Phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein 52 349 - -
Sed06g0122 517 ProSiteProfiles PPM-type phosphatase domain profile. 57 347 IPR001932 -
Sed06g0122 517 PANTHER PROTEIN PHOSPHATASE 48 346 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g0122 Sed-Chr6:793915 Sed06g2185 Sed-Chr6:45618828 4.20E-187 dispersed
Sed06g0122 Sed-Chr6:793915 Sed06g2184 Sed-Chr6:45618828 1.20E-186 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g0122 - - - 0.0