Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g0143 ATGAAGCTGACTCCAAAAGAAGTGGACAAGCTAAATCTGCACAATGCTGGATTTCTAGCACAGAAGCGTCTTGCTCGTGGCTTGAAGCTGAATTACGCTGAAGCTGTAGCACTTATTTCTACACAGATTCTTGAGTTTGCTCGTAATGGAGATAAGAGCGTGGCACAATTGATGGACTTGGGGCCAAAACTCTTAGGAAGGAGACAGGTTCTTCCAGCTGTTCCACATCTTGTGGATTCTGTGCAGGTTGAAGGAACTTTTCCTGATGGGACTAAGTTAGTCACAGTTCATAGGCCCTTTGAAGAAGAAAATGGGAATCTAGAGCAAGCATTGCAGGGTTCTTTTCTTCCAGTTCCTTCACCAGAAAAATTCCCTTTGGTCGAAAACCATGTGGTGCCTGGTGAGATTATCTGTCCAGATGATAAGATTCCTATTAATGTTGGACGAAAAGCTGTAATACTCAGAGTAGTCAATAAGGGAGACAGACCAATTCAGGTTGGCAGCCACTATCACTTTATTGAGGTGAATCCTTCCTTGGTTTTTGATCGGTCAAAAGCATACGGAAAACGCCTCAACATATCAGCAGGATCAGCTACAAGATTTGAGCCAGGGGAATCAAAATCTGTCACACTTGTAGCTATTGGTGGTAACCAAGTTATAAGAGGGGGAAATGGCATTGCCAGTGGTCCAGTTGATAGTTCTAAATTAAAAGAAGTGATGGAAGCTGTGCATGCTAGGGGATTTGGACATGTGGAAGAAAGCAATGCTAGAGAAGGTGTCACTGTAATTGATGATGAATTCACTACCCGACTTTCTCGTGAGGACTATGCCAACCGGTATGGTCCTACTACCGGTGACAAAGTTCGACTTGGTGATACAAATTTATATGCGGAAATCGAACATGATTTCTCTGTTTATGGAGATGAGTGTGTATTTGGTGGTGGAAAGGTTATTAGAGAGGGAATGGGCCAGTCTTGCACGCATCCACCGGCTTTATCCCTTGATACTGTAATAACCAATGCAGTCGTCATTGATTACTGTGGAATTTTCAAGACGGATATAGGTATCAAAGATGGCTACATTATGACCCTTGGAAAATCTGGAAATCCTGATGTCATGGATGGTGTTCATCCTGATCTGATTATTGGGGCTAATACCGAGGTTATTGCTGGAGAAGGATTACTGGTTACAGCAGGGGCCATAGATTGCCATGTGCATTTCATATGCCCTCAACTAGCCTATGAAGCAATATCAAGCGGCATTACAACGCTGGTGGGAGGTGGAACTGGACCTGCGGAAGGAACTTGTGCTACTACTTGCACACCATCTCCAGTGCTGATGAGGATGATGCTACAATCAACTGATGACCTCCCCTTGAATTTTGGCTTTACAGGAAAAGGGAACAGTTCGAAGCCAGATGAGCTACATGAAATAGTAAGGGCTGGAGCAATGGGGCTGAAGCTACATGAAGACTGGGGGACTACTCCTGCTGCAATTGACAATTGCTTAACGGTGGCAGAGAAATATGACATTCAGGTGAATATTCACACAGACACCTTGAATGAATCTGGATTTGTGGAACATACTATTGCAGCTTTTAAGGGAAGAACTATACACACATACCACAGTGAAGGAGCTGGAGGTGGTCATGCTCCAGATATCATTCGAGTGTGCGGGGTGAAAAATGTGCTTCCTTCATCTACTAATCCTACACGACCATTCACGATCAACACTGTAGATGAACATCTTGACATGCTGATGGTGTGCCATCATCTCGATCGCAATATTAAAGAAGATGTAGCTTTTGCAGAATCGAGGATAAGGAAGGAAACAATTGCTGCAGAAGATATTTTGCATGATATGGGTGCAATCAGTATCATATCTTCTGATTCACAGGCTATGGGTCGCATAGGGGAGGTTCTTAATATTTTTTTATTCCTTTATTTCTTCTCTATATTAGAAGGCAGTCCAGTTTTCATTTCAATATCATTGTCGTCTGTTTCTCGTCAATGA 2013 43.07 MKLTPKEVDKLNLHNAGFLAQKRLARGLKLNYAEAVALISTQILEFARNGDKSVAQLMDLGPKLLGRRQVLPAVPHLVDSVQVEGTFPDGTKLVTVHRPFEEENGNLEQALQGSFLPVPSPEKFPLVENHVVPGEIICPDDKIPINVGRKAVILRVVNKGDRPIQVGSHYHFIEVNPSLVFDRSKAYGKRLNISAGSATRFEPGESKSVTLVAIGGNQVIRGGNGIASGPVDSSKLKEVMEAVHARGFGHVEESNAREGVTVIDDEFTTRLSREDYANRYGPTTGDKVRLGDTNLYAEIEHDFSVYGDECVFGGGKVIREGMGQSCTHPPALSLDTVITNAVVIDYCGIFKTDIGIKDGYIMTLGKSGNPDVMDGVHPDLIIGANTEVIAGEGLLVTAGAIDCHVHFICPQLAYEAISSGITTLVGGGTGPAEGTCATTCTPSPVLMRMMLQSTDDLPLNFGFTGKGNSSKPDELHEIVRAGAMGLKLHEDWGTTPAAIDNCLTVAEKYDIQVNIHTDTLNESGFVEHTIAAFKGRTIHTYHSEGAGGGHAPDIIRVCGVKNVLPSSTNPTRPFTINTVDEHLDMLMVCHHLDRNIKEDVAFAESRIRKETIAAEDILHDMGAISIISSDSQAMGRIGEVLNIFLFLYFFSILEGSPVFISISLSSVSRQ 670
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1000931 1009428 - Sed0016931.2 Sed06g0143 716686

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g0143 670 SUPERFAMILY Metallo-dependent hydrolases 399 641 IPR032466 -
Sed06g0143 670 PRINTS Urea amidohydrolase (urease) protein signature 604 620 IPR005848 GO:0009039(InterPro)|GO:0016151(InterPro)
Sed06g0143 670 PRINTS Urea amidohydrolase (urease) protein signature 565 582 IPR005848 GO:0009039(InterPro)|GO:0016151(InterPro)
Sed06g0143 670 SUPERFAMILY Urease, beta-subunit 132 259 IPR036461 -
Sed06g0143 670 CDD Urease_gamma 4 100 IPR002026 GO:0016151(InterPro)|GO:0043419(InterPro)
Sed06g0143 670 PANTHER UREASE 1 641 IPR050069 -
Sed06g0143 670 ProSitePatterns Urease active site. 587 603 IPR017950 GO:0009039(InterPro)
Sed06g0143 670 FunFam Urease 149 267 - -
Sed06g0143 670 Pfam Urease subunit beta-alpha linker domain 231 264 IPR040881 -
Sed06g0143 670 SUPERFAMILY Composite domain of metallo-dependent hydrolases 270 447 IPR011059 GO:0016810(InterPro)
Sed06g0143 670 ProSitePatterns Urease nickel ligands signature. 397 410 IPR029754 GO:0016151(InterPro)
Sed06g0143 670 SUPERFAMILY Urease, gamma-subunit 1 104 IPR036463 GO:0016151(InterPro)|GO:0043419(InterPro)
Sed06g0143 670 Gene3D - 399 644 - -
Sed06g0143 670 NCBIfam urease subunit gamma 1 101 IPR002026 GO:0016151(InterPro)|GO:0043419(InterPro)
Sed06g0143 670 Pfam Urease beta subunit 133 229 IPR002019 GO:0035550(InterPro)|GO:0043419(InterPro)
Sed06g0143 670 NCBIfam urease subunit beta 132 232 IPR002019 GO:0035550(InterPro)|GO:0043419(InterPro)
Sed06g0143 670 ProSiteProfiles Urease domain profile. 399 641 IPR017951 GO:0009039(InterPro)|GO:0016151(InterPro)
Sed06g0143 670 Pfam Amidohydrolase family 395 641 IPR006680 GO:0016787(InterPro)
Sed06g0143 670 FunFam Urease subunit alpha 4 124 - -
Sed06g0143 670 CDD Urease_beta 131 231 IPR002019 GO:0035550(InterPro)|GO:0043419(InterPro)
Sed06g0143 670 Gene3D Urease, beta subunit 131 262 IPR036461 -
Sed06g0143 670 Pfam Urease alpha-subunit, N-terminal domain 270 389 IPR011612 -
Sed06g0143 670 Hamap Urease subunit beta [ureB]. 131 231 IPR002019 GO:0035550(InterPro)|GO:0043419(InterPro)
Sed06g0143 670 Pfam Urease, gamma subunit 1 99 IPR002026 GO:0016151(InterPro)|GO:0043419(InterPro)
Sed06g0143 670 Gene3D - 4 124 IPR036463 GO:0016151(InterPro)|GO:0043419(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g0143 K01427 - - csv:101209590 1203.35
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g0143 Sed-Chr6:1000931 Sed06g1737 Sed-Chr6:42023903 7.90E-271 dispersed
Sed06g0142 Sed-Chr6:997819 Sed06g0143 Sed-Chr6:1000931 0.00E+00 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1171 . . . . . Bpe10g00784 . . Cmo04g01918 Cmo18g00700 . Cma18g00712 . Car18g00657 Sed06g0143 Cpe09g00577 Cpe01g01606 Bhi07g01896 Tan04g0084 Cmetu10g0294 Lac13g0072 . . . . . . . . . . . . . . Lsi04g00663 . . Cme10g00641 Blo06g00828 . . . . . . . . . . Cma04g01821 . Car04g01834 . . . . . . . . . . Cla11g01357 . Cec11g1442 Cco11g1438 Clacu11g1572 Cmu11g1392 Cre11g1813 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003364 1 2 1 1 1 0 2 1 2 1 1 1 2 1 1 2 2 2 2 1 1 1 1 3 3 2 2 3 5 1 49