Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed06g0149 | ATGGCCGACGACTTTCCCGATAAGAACATCCTCCAGAGCTCTGCTCTTCTCCAGTATATACTTGAAGCCAATGCCTATCCCAGAGAGCATGCACTATTGAAGGAACTCAGAGAGACAACCTACGCGAAGCTCGACAAGTCGCAAAGCGTTATGAACGTACCAGCGGATGAAGGATTGTTTCTATCGATGCTTTTGAAATTGATGAACGCAAAGAAAACCATCGAAATCGGCGTATTCACTGGCTATTCGCTCCTGGCCACTGCCCTTGCACTGCCCGCTGATGGCCAGATAACAGCCATTGACGTGGATAGAAAAGCATTCGAGATTGGTTTGCCGTTTATAAAAGAAGCAGCAGTTGATCACAAAATCAATTTTGTGGAATCTCAGGCATCCATTGCCTTGAATGACCTCCTCAATGATGGCAAAGAGGGAGAGTTTGATTTTGCATTTGTGGATGCTAACAAATCAGAATACATCAAATATCACGAAAAGCTTCTAAAATTGGTGAAGATTGGGGGAGTAATTGCGTATGACAACACATTGTGGTTCGGTTCAGTGGCCCTTGCAAACGACGTCGTTCACGAGACTTTGAAGGCAAATAGAATCCACATACGAGAACTCAACCAGTTTCTGGTTAATGACTCACGTGTGGAAATAGCTCTTCTTTCTGTGGGTGATGGCCTAACTCTCTGCAGGCGGATTAATTAG | 708 | 44.77 | MADDFPDKNILQSSALLQYILEANAYPREHALLKELRETTYAKLDKSQSVMNVPADEGLFLSMLLKLMNAKKTIEIGVFTGYSLLATALALPADGQITAIDVDRKAFEIGLPFIKEAAVDHKINFVESQASIALNDLLNDGKEGEFDFAFVDANKSEYIKYHEKLLKLVKIGGVIAYDNTLWFGSVALANDVVHETLKANRIHIRELNQFLVNDSRVEIALLSVGDGLTLCRRIN | 235 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 1055213 | 1059694 | + | Sed0026308.1 | Sed06g0149 | 716692 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed06g0149 | 235 | Gene3D | Vaccinia Virus protein VP39 | 2 | 235 | IPR029063 | - | |
| Sed06g0149 | 235 | PANTHER | O-METHYLTRANSFERASE-RELATED | 7 | 234 | IPR050362 | GO:0008757(PANTHER) | |
| Sed06g0149 | 235 | ProSiteProfiles | SAM-dependent O-methyltransferase class I-type profile. | 9 | 234 | IPR002935 | GO:0008171(InterPro) | |
| Sed06g0149 | 235 | Pfam | O-methyltransferase | 25 | 234 | IPR002935 | GO:0008171(InterPro) | |
| Sed06g0149 | 235 | SUPERFAMILY | S-adenosyl-L-methionine-dependent methyltransferases | 15 | 233 | IPR029063 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed06g0149 | Sed-Chr6:1055213 | Sed06g1745 | Sed-Chr6:42150399 | 2.40E-105 | dispersed | |
| Sed06g0148 | Sed-Chr6:1045626 | Sed06g0149 | Sed-Chr6:1055213 | 3.50E-101 | tandem | |
| Sed06g0149 | Sed-Chr6:1055213 | Sed06g0150 | Sed-Chr6:1055316 | 4.90E-119 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed06g0149 | K00588 | - | csv:101212121 | 356.295 |