Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g0163 ATGGCCGAACTGACGACTCTTCCGTCGAGCCCCAACCGAGAAAGTGAGAAGAATGTGCTGCAGAAACACGTGGCGTTCTTTGATAGAAACCAAGACGGCGTCGTTTATCCATGGGAAACCTTCAAAGGCTTTCGAGCAATCGGGGCCGGTTTTCTTCTGTCAGCTGCCGGCGCGGTTTTTATTAACGCTGGACTCAGTTCAAAAACCCGACCGGGAAAATTTCCAAATTTATTGTTCCCAATTGAAATAAAGAACATTAACCTTGCCAAACATGGAAGTGATACTGGTGTATACGATTCTGAGGGAAGGTTTGTTGCTTCAAAGTTTGAACAAATTTTCAAGAAGCATGCATTAACCTATCCCAATGCCTTGACAGAAAAAGAGCTTAAAGACTTGCTCACTGCAAATAAAGAGCCCAAAGACTATTTTGGATGGATTGCTGCAAAGGCAGAATGGACAATTCTATACAGTCTTTGCAAAGATGAGAAAGGATTACTTGAAAAGGAGACTGTGAAAGCAGTTTATGATGGAAGCTTATTTGAACATATGGAGAAAGAGAGAGCTTCAAACAAAAAGAAATGA 582 41.75 MAELTTLPSSPNRESEKNVLQKHVAFFDRNQDGVVYPWETFKGFRAIGAGFLLSAAGAVFINAGLSSKTRPGKFPNLLFPIEIKNINLAKHGSDTGVYDSEGRFVASKFEQIFKKHALTYPNALTEKELKDLLTANKEPKDYFGWIAAKAEWTILYSLCKDEKGLLEKETVKAVYDGSLFEHMEKERASNKKK 193
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1140655 1144309 + Sed0024976.1 Sed06g0163 716706

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g0163 193 PANTHER PEROXYGENASE 3-RELATED 12 191 IPR007736 GO:0004497(PANTHER)|GO:0005509(PANTHER)
Sed06g0163 193 Pfam Caleosin related protein 16 183 IPR007736 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g0163 K17991 - - csv:101213829 311.227
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g2013 Sed-Chr4:34591768 Sed06g0163 Sed-Chr6:1140655 1.00E-36 dispersed
Sed06g0163 Sed-Chr6:1140655 Sed06g0164 Sed-Chr6:1150340 5.50E-84 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed06g0164 . 12 192 Pollen Coat Proteome AT1G23240 55.2 1.6e-58 223.8
Sed06g0163 . 14 193 Pollen Coat Proteome AT1G23240 55.0 1.1e-56 217.6
Sed06g0164 . 12 192 Pollen Coat Proteome AT1G23240 55.2 1.6e-58 223.8
Sed06g0163 . 14 193 Pollen Coat Proteome AT1G23240 55.0 1.1e-56 217.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007695 2 1 0 0 3 1 2 1 1 0 1 1 2 1 1 2 1 2 1 1 1 1 2 1 1 1 1 2 1 1 36