Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed06g0179 | ATGAGCAATCGGCCAGGGCTTCTTCGAATTCGCCTGTTGCGAGGTATCAATCTCGCCATTCGCGATGCTCCCACTCGCAGCAGCGATCCCTACGTCGTCATCTCCACCGCTAATCAGAAATTCAAATCTCGAGTGGTGAAAAAGGACTGCAATCCACAATGGAACGAGGAGTTCACACTTTCAATCACAAATGTCAACACACCAATCAAACTAGCAGTGTTCGACAAAGATAGGTTCACGAAGGATGACGGAATGGGGGATGCCGAGATCGACATAAAACCGTACATAGAGTGTTTGAATATGGGGTTAGGGAATCTGCCAAATGGTTGTGTGGTGAAAAGGATTCAACCAACAAGATCAAACAGCCTTGCAGATGAGAGCTCTTGTGTTTGGAATGATGGTAAGATCATCCAAGAGATGACTCTTAGATTGCAGAATGTTGAATGTGGTGAAATTATGATTCAGATTCAGTTGTTCAATGCTTCTGGGATTCAAGGCATTTGA | 504 | 44.64 | MSNRPGLLRIRLLRGINLAIRDAPTRSSDPYVVISTANQKFKSRVVKKDCNPQWNEEFTLSITNVNTPIKLAVFDKDRFTKDDGMGDAEIDIKPYIECLNMGLGNLPNGCVVKRIQPTRSNSLADESSCVWNDGKIIQEMTLRLQNVECGEIMIQIQLFNASGIQGI | 167 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 1242089 | 1244786 | - | Sed0015768.1 | Sed06g0179 | 716722 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed06g0179 | 167 | SMART | C2_3c | 7 | 104 | IPR000008 | - | |
Sed06g0179 | 167 | Gene3D | C2 domain | 2 | 165 | IPR035892 | - | |
Sed06g0179 | 167 | Pfam | C2 domain | 6 | 94 | IPR000008 | - | |
Sed06g0179 | 167 | PRINTS | C2 domain signature | 24 | 36 | IPR000008 | - | |
Sed06g0179 | 167 | PRINTS | C2 domain signature | 48 | 61 | IPR000008 | - | |
Sed06g0179 | 167 | PRINTS | C2 domain signature | 69 | 77 | IPR000008 | - | |
Sed06g0179 | 167 | PANTHER | PROTEIN C2-DOMAIN ABA-RELATED 4 | 1 | 163 | IPR044562 | - | |
Sed06g0179 | 167 | ProSiteProfiles | C2 domain profile. | 1 | 108 | IPR000008 | - | |
Sed06g0179 | 167 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 3 | 158 | IPR035892 | - | |
Sed06g0179 | 167 | CDD | C2_ArfGAP | 5 | 150 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed06g0179 | Sed-Chr6:1242089 | Sed11g1445 | Sed-Chr11:30266181 | 1.20E-55 | dispersed | |
Sed04g3031 | Sed-Chr4:41441341 | Sed06g0179 | Sed-Chr6:1242089 | 2.20E-79 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed06g0179 | - | - | - | 0.0 |