Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g0179 ATGAGCAATCGGCCAGGGCTTCTTCGAATTCGCCTGTTGCGAGGTATCAATCTCGCCATTCGCGATGCTCCCACTCGCAGCAGCGATCCCTACGTCGTCATCTCCACCGCTAATCAGAAATTCAAATCTCGAGTGGTGAAAAAGGACTGCAATCCACAATGGAACGAGGAGTTCACACTTTCAATCACAAATGTCAACACACCAATCAAACTAGCAGTGTTCGACAAAGATAGGTTCACGAAGGATGACGGAATGGGGGATGCCGAGATCGACATAAAACCGTACATAGAGTGTTTGAATATGGGGTTAGGGAATCTGCCAAATGGTTGTGTGGTGAAAAGGATTCAACCAACAAGATCAAACAGCCTTGCAGATGAGAGCTCTTGTGTTTGGAATGATGGTAAGATCATCCAAGAGATGACTCTTAGATTGCAGAATGTTGAATGTGGTGAAATTATGATTCAGATTCAGTTGTTCAATGCTTCTGGGATTCAAGGCATTTGA 504 44.64 MSNRPGLLRIRLLRGINLAIRDAPTRSSDPYVVISTANQKFKSRVVKKDCNPQWNEEFTLSITNVNTPIKLAVFDKDRFTKDDGMGDAEIDIKPYIECLNMGLGNLPNGCVVKRIQPTRSNSLADESSCVWNDGKIIQEMTLRLQNVECGEIMIQIQLFNASGIQGI 167
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1242089 1244786 - Sed0015768.1 Sed06g0179 716722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g0179 167 SMART C2_3c 7 104 IPR000008 -
Sed06g0179 167 Gene3D C2 domain 2 165 IPR035892 -
Sed06g0179 167 Pfam C2 domain 6 94 IPR000008 -
Sed06g0179 167 PRINTS C2 domain signature 24 36 IPR000008 -
Sed06g0179 167 PRINTS C2 domain signature 48 61 IPR000008 -
Sed06g0179 167 PRINTS C2 domain signature 69 77 IPR000008 -
Sed06g0179 167 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 1 163 IPR044562 -
Sed06g0179 167 ProSiteProfiles C2 domain profile. 1 108 IPR000008 -
Sed06g0179 167 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 3 158 IPR035892 -
Sed06g0179 167 CDD C2_ArfGAP 5 150 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g0179 Sed-Chr6:1242089 Sed11g1445 Sed-Chr11:30266181 1.20E-55 dispersed
Sed04g3031 Sed-Chr4:41441341 Sed06g0179 Sed-Chr6:1242089 2.20E-79 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g0179 - - - 0.0