Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g0188 ATGGCCGGAATCGTCACCGGCGACAGCGACAGTCCACCGGCCGAAGCTCTACTGCGCCTAATTCACGATGTTGTTCGAATTTCGGCGGGGACGAACAGCGGAGAGGTTTTCAAGAAGGATTGCACCGATCTGGTGCGCCGGATCGGGCTCTTGACGCATTTGTTTGAGGAGACCAGAGACTTTAATGGCGTCCGATTCCGGCCAGTTGATTCATCTTGTTCTTCTTTTTCTTCTCCGAATCCGTGGCTGTGTGATTTGGTGGCGGCATTGAAAGATGCTAAGCGCCTCGTTTTCGACGCTTCGACTTTTCGTTCCTGCAGTTCTTCTGAGGAAGTTGCCAAGAAGATACTCTTCCAGTTCCAATGCGTTACGTGGAAGTTAGAGAAAGCATTGGGAAATCTCCCTTATGATCACTTTGATATATCAGAGGAAGTTCAAGAACAGGTTGAATTAGTGAGAACTCAGTTGAGAAGAGCAGCGGAAAAATATGGCTCGCTGACTGCGATTCCGCCGAAAAACATGGACCTATTGAATTTGAACAAATGGGCTGATAACTTTGATGGTGAGGAGAATGGTGTTGTTGATCATGCGATAACAGTGAAATTTGATGCTTTTCCAAATTGTAGAGAATTGATGAATAATAGTGTGGATCAGCTGATTTTCAAAGGACTTGAAAAACTTTCATCCTCTTCAGAACCTTGTTCTGATGGACAGGAAGATTCTGCCAGAAAGAGTGAAGACCAGTTGAAGAAGTCAGATGGAGTTTCAATACCTGATGATTTTTTATGCCCCATTTCCCTGGAAATAATGAGGGATCCTGTTATTGTATCTACAGGACAGACGTATGAGAGATCTTATGTTCAAAGATGGATAGACTGTGGGAATACTACTTGTCCCAAAACTCAGCAGAAGCTCCAAAGTTTGACTCTCACCCCAAATTATGTACTGCGAAGGTTGATTACTCAATGGTGTGTTAGTCACAATATTGAGCAACCAACAGGATTAACCAATGGAAAGATCAAAAAGTGCGATGGATCGTACCATGATGTGGTTGAGGAGATGGCAGCTATCGAAAGTCTGGTCCGTAAGCTGACTAGCCAATCAATCGAGGAGCAGAGAGCTTCCGTGACCGAACTTCGATCTCTATCGAAAAGAAGCACAGATAACAGAATACTGATAGCTGAAGCAGGAGCAATTCCAAATTTGGTCAATTTGTTAACATCTGATGATGTTTTAATTCAAGAAAATGCGGTTACTTCCATTCTCAACCTTTCAATATATGAGAACGGCAAGGGACTAATTATGCTTGCTGGTGCAGTACCTTCCATTGTCCAAGTTCTAAGAGTTGGAAGCATGGAATCGAGAGAAAACGCAGCAGCAACATTATTCAGCTTGTCTCTTGCCGATGAAAATCGGATAATCATTGGTGCTTCCGGGGCCATTCCAGCTCTTGTAGATTTACTCGAAAATGGTAGCTCGAGAGGGAAGAAGGATGCTGCAACAGCACTATTTAATTTGTGTATTTACCAGGGGAACAAGGGAAGGGCTGTGAGGGCAGGGATCATTCCAGCTCTATTAAAGATGCTTACCGACACGGTTAACTCCATGGTCGACGAAGCTCTCACAATAATGTCGGTCCTGGCCAGCCATCAAGAAGGAAAAGTAGCCATGGTGAAGACCAGTACCATACCTGTTCTAGTAGACCTGATGAGGACTGGACTGCCTCGCAACAAAGAAAATGTTGCTGCTATTCTGCTTGCTTTGTGCAAACGGGACACCGACAACCTTTCTTGCATAAGTAGGCTCGGCGCCATGATTCCTCTAACCGAGCTCGCCAATAGCGGCACGGAGAGAGCGAAAAGGAAGGCAACTTCACTGTTGGAACATCTTCGAAAACTACAGCAGCTATAG 1911 44.9 MAGIVTGDSDSPPAEALLRLIHDVVRISAGTNSGEVFKKDCTDLVRRIGLLTHLFEETRDFNGVRFRPVDSSCSSFSSPNPWLCDLVAALKDAKRLVFDASTFRSCSSSEEVAKKILFQFQCVTWKLEKALGNLPYDHFDISEEVQEQVELVRTQLRRAAEKYGSLTAIPPKNMDLLNLNKWADNFDGEENGVVDHAITVKFDAFPNCRELMNNSVDQLIFKGLEKLSSSSEPCSDGQEDSARKSEDQLKKSDGVSIPDDFLCPISLEIMRDPVIVSTGQTYERSYVQRWIDCGNTTCPKTQQKLQSLTLTPNYVLRRLITQWCVSHNIEQPTGLTNGKIKKCDGSYHDVVEEMAAIESLVRKLTSQSIEEQRASVTELRSLSKRSTDNRILIAEAGAIPNLVNLLTSDDVLIQENAVTSILNLSIYENGKGLIMLAGAVPSIVQVLRVGSMESRENAAATLFSLSLADENRIIIGASGAIPALVDLLENGSSRGKKDAATALFNLCIYQGNKGRAVRAGIIPALLKMLTDTVNSMVDEALTIMSVLASHQEGKVAMVKTSTIPVLVDLMRTGLPRNKENVAAILLALCKRDTDNLSCISRLGAMIPLTELANSGTERAKRKATSLLEHLRKLQQL 636
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1341406 1345034 - Sed0000487.1 Sed06g0188 716731
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g0188 636 PANTHER U BOX DOMAIN-CONTAINING 36 632 - -
Sed06g0188 636 CDD RING-Ubox_PUB 258 310 IPR045210 -
Sed06g0188 636 FunFam RING-type E3 ubiquitin transferase 434 534 - -
Sed06g0188 636 FunFam RING-type E3 ubiquitin transferase 340 433 - -
Sed06g0188 636 SUPERFAMILY ARM repeat 353 630 IPR016024 -
Sed06g0188 636 MobiDBLite consensus disorder prediction 237 254 - -
Sed06g0188 636 Gene3D - 435 535 IPR011989 -
Sed06g0188 636 SMART Ubox_2 260 323 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Sed06g0188 636 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 397 439 IPR000225 GO:0005515(InterPro)
Sed06g0188 636 Coils Coil 616 636 - -
Sed06g0188 636 FunFam RING-type E3 ubiquitin transferase 255 330 - -
Sed06g0188 636 Gene3D - 333 434 IPR011989 -
Sed06g0188 636 Pfam Armadillo/beta-catenin-like repeat 469 507 IPR000225 GO:0005515(InterPro)
Sed06g0188 636 Pfam Armadillo/beta-catenin-like repeat 386 425 IPR000225 GO:0005515(InterPro)
Sed06g0188 636 Coils Coil 142 162 - -
Sed06g0188 636 FunFam RING-type E3 ubiquitin transferase 536 635 - -
Sed06g0188 636 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 254 330 IPR013083 -
Sed06g0188 636 SUPERFAMILY RING/U-box 252 330 - -
Sed06g0188 636 ProSiteProfiles U-box domain profile. 256 330 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Sed06g0188 636 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 438 480 IPR000225 GO:0005515(InterPro)
Sed06g0188 636 Gene3D - 536 635 IPR011989 -
Sed06g0188 636 SMART arm_5 509 549 IPR000225 GO:0005515(InterPro)
Sed06g0188 636 SMART arm_5 343 384 IPR000225 GO:0005515(InterPro)
Sed06g0188 636 SMART arm_5 550 590 IPR000225 GO:0005515(InterPro)
Sed06g0188 636 SMART arm_5 386 426 IPR000225 GO:0005515(InterPro)
Sed06g0188 636 SMART arm_5 592 632 IPR000225 GO:0005515(InterPro)
Sed06g0188 636 SMART arm_5 427 467 IPR000225 GO:0005515(InterPro)
Sed06g0188 636 SMART arm_5 468 508 IPR000225 GO:0005515(InterPro)
Sed06g0188 636 Pfam U-box domain 257 328 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Sed06g0188 636 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 479 521 IPR000225 GO:0005515(InterPro)
Sed06g0188 636 MobiDBLite consensus disorder prediction 228 255 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g0188 Sed-Chr6:1341406 Sed11g1664 Sed-Chr11:31926072 3.60E-71 dispersed
Sed04g3043 Sed-Chr4:41531483 Sed06g0188 Sed-Chr6:1341406 1.50E-197 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g0188 - - - 0.0