Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g0192 ATGCAACACACCATGGGGTTTAGGGGAATATGGGTGTTGTTCTCAATAATGCTTGTAACTTCAAGTAATGCTGCTTTGGATGAACAGACCTACATTATTCACATGGACACTACAAAAATGGCTACCACCAACCCTGAACAATGGTACACTTCCATCATTGATTCAGTCAATCAACTCGCATCTCTCGATGACGACGAAGACGAAAAATCAAATGTCGCCGAGATTCTCTACATCTACAAAACTGCGATTTCAGGTTTTGCTGCAAAGCTCTCCAACAAAAAACTTAATTCTTTAAGCAAAATCCCTGGCTTTCTAGCAGCCACTCCCAATGAACTACTCCAACTCCACACCACACATTCACCAAAGTTTCTAGGCCTACAAAATAGCCATGGCCTTTGGAATTCTTCAAACTTAGCTTCTGATATAATTATTGGTGTTCTTGACACTGGCATTTGGCCTGAGCATATAAGTTTTCAAGACAAGGGTCTGCCCCCAGTGCCTAAAAGGTGGAAAGGCATTTGTCAAGCGGGTCCAAAGTTCTCACGCTCGAACTGCAACAACAAACTCGTCGGCGCAAGTGCCTATATTAAAGGCTACGAGGCCATCGTTGGTAGATTGAATGAAACGGGTACGTTTCGGTCGCCTCGAGACTCGGATGGACATGGTACACACACAGCATCTACTGCTGCTGGTAATGTTGTGTATAACGCTAGCCTTTTTAGCCAAGGCATGGGAGTAGCCACTGGAATGAGGTTCACTTCAAGGATCGCAGCGTACAAAGTATGCTGGCCCGAGGGGTGCGCCAATGCCGATATCTTAGCAGCAATAGACCGCGCCGTGGCCGATGGAGTCGATGTTCTATCACTCTCATTAGGAGGTGGAGCCAGTATTTTTTACAAAGATGAAATAGCCATAGCTACATTTGGTGCTGTTCAAAAAGGGGTCTTTGTGTCATGTTCAGCTGGTAACTCAGGCCCATTTAGCTCAACAGTTGGCAATGCAGCACCATGGATCATGACAGTGGCTGCTAGCTACACTGATAGAACATTCCCAGCCATTGTAAAGCTTGGAAATGGAAACGTTTTTGAAGGCTCCTCTTTGTATTATGGCAACAACACAATTCAACTCCCTCTTGTTTATAACAAAACTGCTGGTGGAAATGATGCAAATGTTTGTATCCCTGGTTCACTTGTTCCATCATTGGTCAAGGGCAAAATTGTCATATGCGAACGAGGATCGAATTCGAGAACGGCGAAAGGCGAGGTGGTGAAATCGGCAGGAGGAGCTGGGATGATTTTAATTAATACACAACTTGAAGGTGAGGAGCTTTTTGCTGACCCTCATGTTTTACCTGCCACTAACCTTGGAGCTTCAGCTGGTAAAGCCATCATAAACTATATAACGTCGTCCTCGAAAAATCAACCGAAAGGTTCTATCACATTCGAAGGGACGAAATACGGAAGTCGAGCACCGAGAGTGGCTGCGTTTTCTTCACGAGGACCGAGTGGCGTTGGATCGGATGTGATAAAGCCGGATGTAACTGCACCGGGCGTTAATATATTAGCTGCTTGGCCACTCAACGTGAGCCCGACAGAGCTCGAGTCGGATAAAAGACGGGTGATTTTCAACATCATTTCAGGAACTTCTATGTCTTGCCCTCATGCTAGTGGATTAGCAGCATTGCTTAAATCAGCACACAAAAGCTGGTCACCAGCTGCTATCAAATCTGCACTCATGACCACAGCTTACACTACTGACAACCGAAGGAGACCGATTTCCGACGTTGGCTCTGAAAGTGGAAAGCCCGCAGACCCTTTCGCGTTCGGTTCGGGCCATGTCGATCCCGAGAAAGCCTCCGATCCGGGGCTTATATACGATATCACAAACCAAGACTACCTAAACTATTTGTGTAGTTTGAAGTATAATGCAACACAAATTGCTTTAATTTCAAGAGGGAATTTCACATGTCCATCAAAAAAGCAAATTCTTCAGCCAGGGGATTTGAATTACCCTTCATTCTCAGTGTTCATGAAAAAGAAAGCCAAAAATGTTAGTGTTACATTCAAGAGAACAGTGACAAATGTTGGGATCCCAATGAGTGATTACACTGTTAAAATCAACAATCCAAAGGGAATAGAAATTACTGTGAAGCCAATGAAGTTAAATTTTGGGAAATTGGGAGAGAAATTAAGTTACAAAGTGAGTTTTGTTTCATTGGGAAAAAGAGAAGCTTTGGGTAAATTTTCTTTTGGATCAATTGTTTGGATTTCAGGAAAATATGCTGTGAGAAGTCCAATAGCAGTGACGTGGCAGTAG 2316 44.0 MQHTMGFRGIWVLFSIMLVTSSNAALDEQTYIIHMDTTKMATTNPEQWYTSIIDSVNQLASLDDDEDEKSNVAEILYIYKTAISGFAAKLSNKKLNSLSKIPGFLAATPNELLQLHTTHSPKFLGLQNSHGLWNSSNLASDIIIGVLDTGIWPEHISFQDKGLPPVPKRWKGICQAGPKFSRSNCNNKLVGASAYIKGYEAIVGRLNETGTFRSPRDSDGHGTHTASTAAGNVVYNASLFSQGMGVATGMRFTSRIAAYKVCWPEGCANADILAAIDRAVADGVDVLSLSLGGGASIFYKDEIAIATFGAVQKGVFVSCSAGNSGPFSSTVGNAAPWIMTVAASYTDRTFPAIVKLGNGNVFEGSSLYYGNNTIQLPLVYNKTAGGNDANVCIPGSLVPSLVKGKIVICERGSNSRTAKGEVVKSAGGAGMILINTQLEGEELFADPHVLPATNLGASAGKAIINYITSSSKNQPKGSITFEGTKYGSRAPRVAAFSSRGPSGVGSDVIKPDVTAPGVNILAAWPLNVSPTELESDKRRVIFNIISGTSMSCPHASGLAALLKSAHKSWSPAAIKSALMTTAYTTDNRRRPISDVGSESGKPADPFAFGSGHVDPEKASDPGLIYDITNQDYLNYLCSLKYNATQIALISRGNFTCPSKKQILQPGDLNYPSFSVFMKKKAKNVSVTFKRTVTNVGIPMSDYTVKINNPKGIEITVKPMKLNFGKLGEKLSYKVSFVSLGKREALGKFSFGSIVWISGKYAVRSPIAVTWQ 771
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1399926 1404955 - Sed0006414.1 Sed06g0192 716735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g0192 771 ProSitePatterns Serine proteases, subtilase family, aspartic acid active site. 144 155 IPR023827 -
Sed06g0192 771 ProSitePatterns Serine proteases, subtilase family, serine active site. 547 557 IPR023828 -
Sed06g0192 771 Pfam Subtilase family 140 611 IPR000209 GO:0006508(InterPro)|GO:0008236(InterPro)
Sed06g0192 771 ProSiteProfiles Serine proteases, subtilase domain profile. 118 619 - -
Sed06g0192 771 MobiDBLite consensus disorder prediction 589 614 - -
Sed06g0192 771 SUPERFAMILY Subtilisin-like 115 623 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
Sed06g0192 771 PRINTS Subtilisin serine protease family (S8) signature 139 158 IPR015500 -
Sed06g0192 771 PRINTS Subtilisin serine protease family (S8) signature 546 562 IPR015500 -
Sed06g0192 771 PRINTS Subtilisin serine protease family (S8) signature 217 230 IPR015500 -
Sed06g0192 771 CDD PA_subtilisin_like 354 479 - -
Sed06g0192 771 Gene3D - 636 770 - -
Sed06g0192 771 FunFam Subtilisin-like protease SBT1.5 636 771 - -
Sed06g0192 771 Pfam Peptidase inhibitor I9 30 116 IPR010259 -
Sed06g0192 771 FunFam subtilisin-like protease SBT1.5 347 486 - -
Sed06g0192 771 CDD Peptidases_S8_3 113 583 IPR034197 -
Sed06g0192 771 Gene3D Peptidase S8/S53 domain 141 632 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
Sed06g0192 771 SUPERFAMILY PA domain 367 462 IPR046450 -
Sed06g0192 771 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 17 116 IPR037045 -
Sed06g0192 771 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 30 766 IPR045051 -
Sed06g0192 771 FunFam Subtilisin-like protease SBT1.5 141 358 - -
Sed06g0192 771 Pfam PA domain 375 463 IPR003137 -
Sed06g0192 771 Gene3D - 347 486 - -
Sed06g0192 771 Pfam Fibronectin type-III domain 667 768 IPR041469 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3943 Sed-Chr1:68564493 Sed06g0192 Sed-Chr6:1399926 3.00E-178 dispersed
Sed05g0151 Sed-Chr5:910793 Sed06g0192 Sed-Chr6:1399926 6.40E-184 dispersed
Sed06g0192 Sed-Chr6:1399926 Sed12g1704 Sed-Chr12:28243348 1.40E-199 dispersed
Sed06g0191 Sed-Chr6:1362684 Sed06g0192 Sed-Chr6:1399926 0.00E+00 tandem
Sed06g0192 Sed-Chr6:1399926 Sed06g0193 Sed-Chr6:1416417 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g0192 - - - 0.0