Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g0194 ATGTTTCCAACTTCAGTTATGAAGGAGCATGATATCCCTGATTCTAAACGTCCCATTGCAAACTATCATCCTAGTATTTGGAAGGACCATTTCATTTCATTAAGCTCAAGCGAATTGGAAGTAGATGATACAATGATTGAAGAAGTTGAGAAGTTGAAAGAAGAAGTAAGGAAAATGTTGGTTATTTCATTGAGAAACCCAATGGAAAAGATTGAATTGGTGGATTCAATTCAACAATTAGGTGTATATTACCATTTTGAAGAAGAGATTGATCAAATCTTAGAATTAATATATATGAACTATAACACCTTCTTAAGTGAAGATGATGATCTTCATATTACTTCTCTTCTTTTTCGACTTCTCAGACAACAAGGCTACAAAATTTCATGCGATATATTCTCAAAGTTCATAGAAAAGAATGGGAAATTCAAGGAATCATTGGCAGATAATGAAAGGGGAATTTTGAGCCTTTATGAAGCAGCACATATGAGGGGACATGGAGAAGATGTTCTTGAAGAAGCTCTTGAGTTTTCTACAACTCTTCTTAACAAATTTATTGACCAATCAAGTCCTCCTTTTGCAGCTGAAGTTAAGAATGCCTTAAAATGCCCAATAAGAAAATATATTCCAAGAAAAAAGGCAAGAGAGTACTTATTAATCTACCAAAATCATCCCTCTCACAACCATACTTTGCTTGCTTTTTCAAAATTAGACTTCAACATATTGCAAAAGCTTCACCAAAAAGAATTATCTCAAATTTCAAGGTGGTGGAAGGATTTGGATGTCCCAACAAACTTTCCATTTGCAAGAGACAGAATTGTGGAGTGTTACTTATGGATATTGGGTGTATATTTTGAACCTCATTTCAATGTGGGAAGGAAAATATTGACTAAAGTGATAGCCATGACATCAATTCTAGATGATATATATGATGCCTATGGGACATTTGAAGAACTCCAAGTCTTCACTTTGGCAATCAAAAGGTGGGACAAAAGCATGATTAATCTACTTCCAGAATACATGAAAGTTTATTATACAAATCTACTACATATTTTCGATGAAATTGATAAAGAGATAGGAAATGATGAAATATCACATCGTGCAAAAGAAGAAATGAAAAGGCAAGCAGACTTCTATTTGAAAGAAGCTGAATGGTTAAACAGAAATTATAAACCAAATTTTGAAGAATACATGGAAGTGGCTCTTGTTACCTCAGGTTATTCACTACTTGCAACAATTTCATTTGTTGGCATGGGTGACATTGCAACAAAGGAAGTTTTTGATTGGCTCTTTCAATGCCCTAAAATAATTGAAGCCTCAACCACCATTTGTAGACTCATGGATGATGTTGTCTCCTACAAGAATGAGCGTGAAAGAGAACATATTTTTTCCGCTGTTGAATGTTATATGGAGAAATATGGGTGCTCAGAAGAGGAAGCAATTGTTGAACTTTATAAGGAAGTAGAAGATGCATGGAAGAACATAAATGAAGCTTGTATTCATCCAATGCCTGTCCCAATGCCGTTTTTATTGCGAATATTAAATCTTTCAAGAGTTGTGACCCTACTTTATTCAGACGAGGATGGATACACAAATGCTAAGGGTACAACCAAATTTCTTATTCATTCTCTACTGGTTGACCCAGTTATTTGA 1653 34.42 MFPTSVMKEHDIPDSKRPIANYHPSIWKDHFISLSSSELEVDDTMIEEVEKLKEEVRKMLVISLRNPMEKIELVDSIQQLGVYYHFEEEIDQILELIYMNYNTFLSEDDDLHITSLLFRLLRQQGYKISCDIFSKFIEKNGKFKESLADNERGILSLYEAAHMRGHGEDVLEEALEFSTTLLNKFIDQSSPPFAAEVKNALKCPIRKYIPRKKAREYLLIYQNHPSHNHTLLAFSKLDFNILQKLHQKELSQISRWWKDLDVPTNFPFARDRIVECYLWILGVYFEPHFNVGRKILTKVIAMTSILDDIYDAYGTFEELQVFTLAIKRWDKSMINLLPEYMKVYYTNLLHIFDEIDKEIGNDEISHRAKEEMKRQADFYLKEAEWLNRNYKPNFEEYMEVALVTSGYSLLATISFVGMGDIATKEVFDWLFQCPKIIEASTTICRLMDDVVSYKNEREREHIFSAVECYMEKYGCSEEEAIVELYKEVEDAWKNINEACIHPMPVPMPFLLRILNLSRVVTLLYSDEDGYTNAKGTTKFLIHSLLVDPVI 550
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1436334 1441193 - Sed0008638.1 Sed06g0194 716737

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g0194 550 Pfam Terpene synthase, N-terminal domain 26 201 IPR001906 GO:0010333(InterPro)|GO:0016829(InterPro)
Sed06g0194 550 SFLD Isoprenoid Synthase Type I 227 549 - -
Sed06g0194 550 CDD Terpene_cyclase_plant_C1 17 548 IPR044814 GO:0010333(InterPro)|GO:0016102(InterPro)
Sed06g0194 550 FunFam Isoprene synthase, chloroplastic 65 227 - -
Sed06g0194 550 Pfam Terpene synthase family, metal binding domain 258 493 IPR005630 GO:0000287(InterPro)|GO:0010333(InterPro)|GO:0016829(InterPro)
Sed06g0194 550 Coils Coil 369 389 - -
Sed06g0194 550 SFLD Terpene Cyclase Like 1 C Terminal Domain 227 549 IPR034741 -
Sed06g0194 550 Gene3D - 65 227 IPR036965 GO:0010333(InterPro)|GO:0016829(InterPro)
Sed06g0194 550 PANTHER OS04G0344100 PROTEIN-RELATED 21 530 - -
Sed06g0194 550 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 23 227 IPR008930 -
Sed06g0194 550 FunFam Isoprene synthase, chloroplastic 204 539 - -
Sed06g0194 550 SUPERFAMILY Terpenoid synthases 227 549 IPR008949 -
Sed06g0194 550 Gene3D Farnesyl Diphosphate Synthase 24 538 IPR008949 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g0194 K15803 - - csv:101211697 790.03
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g0194 Sed-Chr6:1436334 Sed06g0197 Sed-Chr6:1475768 1.30E-298 dispersed
Sed06g0194 Sed-Chr6:1436334 Sed06g0195 Sed-Chr6:1460031 2.90E-255 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g400 Blo03g00604 . Bda07g00326 . . . . Bma13g00962 . . . . . . . . . . . . . . . . Cla10g00585 Cam10g0569 Cec10g0603 Cco10g0579 Clacu10g0605 Cmu10g1417 Cre10g0818 . . . . . Csa03g00574 . Cme06g02685 . . . . . . . . Sed06g0194 . . . Cma16g00826 . . . . Bhi11g00692 Tan01g1636 Cmetu06g2161 . . Mch10g1155 . . . . . . . . Lsi05g00660 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000035 13 6 8 10 4 9 1 10 10 12 7 10 13 12 18 10 8 8 4 9 11 10 7 16 20 21 5 29 24 12 337