Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g0201 ATGGAATCAACCAACTCCCTTTACTCCATCTTCTTGTTCTTATTCTTCTTCTTCGCTTCATTTCCATTTCCATCCACTTCAACAACGCCGCCATTTTTTCCGGCCGAAGCTTTTCCGACGAAATCCGGCTATCTTCCGATCAACAAAACCACCGGCTCCGCCATTTACTTCACCTTCTACGAAGCCCAAGCCCCAATTTCCCCTCTCTCAAAAACCCCTCTTCTAATCTGGCTCCAAGGCGGCCCTGGCTGTTCTTCCATGATCGGCAACTTCTTCGAGCTCGGTCCATGGCGGGTCAACTTCCACAAGCAAAAAACCGACCCCATTTCCCTAATCCCAAATCCCGGCTCATGGAACCGGAGATTCGGGCTTCTGTTCCTCGACAACCCGATCGGAACCGGGTTCAGCATTGCAGCAACAAAAGATGAGATCCCTAGAGACCAGTACTCTGTTTCTAACCATCTTTTTTCTGCAATTTCTTCGTTTATTGAGCTTGATTTGCTGTTTAGGAATCGACCCATTTTCATTACAGGGGAGAGTTATGCAGGGAAATATGTACCCTCAATTGGGTATTTCATTTTGAAGAAAAACCCCAAATTGCCTGTTGGTAAGAGGCTTAATTTGAAAGGTGTTGCTATTGGTGATGGGTTGACTGATCCAATTTCTCAAGTTAAAACTCATGGTTTGAATGCTTTCTATTCTGGTTTGATTAATGAGAAACAAAAAAGGGAATTGGAGATTGTTCAAATGGAGGCTGTGGATTTGGTTAAAATGGGGAATTGGAGTCAGGCTAGAAAGGCTAGGAATAGGGTTTTGGATTTGCTTATGAACATGACTGGTTTGGCTACTTTGTATGATTATACAAGGAAAGTTCCTTATAATTCTGAGTTAGTGGCTGATTTTTTGAGTTTTAAGGAGATTAAGAGGGTTTTGGGAGTTAATGAGTCCATGGTTTTTGAAGAATGTAGTGATGTTGTTGGGGAGGTTTTGAGTGGTGATGTGATGAAGAGTGTGAAATATAAGGTTGATTTCTTGGTGAAGAATAGTAAGGTTTTGCTTTATCAAGGGCAGTTTGATTTGAGGGATGGTGTTGTTTCAACTGAGGCTTGGGTTAAGAAGTTGAAATGGGAAGAGATTGGGAGGTTTTTGGAAGCTGATAGAAAGATTTGGAGAGTTGGTGGTGAGTTGGCTGGTTATGTTCAGAAATGGAAGAGTTTGAGCAATGTTGTTGTTTTGGGAGCTGGTCATCTTCTTCCAAATGATCAAGCTTTGAATTCTCAAGCTATGATTGAAGATTGGGTTTTGGATAAGGGAGTTTTTGGTGTTGATGATGAGGATGATGATGCACAAGAGAAGAGGCATTTTATTTGA 1371 41.94 MESTNSLYSIFLFLFFFFASFPFPSTSTTPPFFPAEAFPTKSGYLPINKTTGSAIYFTFYEAQAPISPLSKTPLLIWLQGGPGCSSMIGNFFELGPWRVNFHKQKTDPISLIPNPGSWNRRFGLLFLDNPIGTGFSIAATKDEIPRDQYSVSNHLFSAISSFIELDLLFRNRPIFITGESYAGKYVPSIGYFILKKNPKLPVGKRLNLKGVAIGDGLTDPISQVKTHGLNAFYSGLINEKQKRELEIVQMEAVDLVKMGNWSQARKARNRVLDLLMNMTGLATLYDYTRKVPYNSELVADFLSFKEIKRVLGVNESMVFEECSDVVGEVLSGDVMKSVKYKVDFLVKNSKVLLYQGQFDLRDGVVSTEAWVKKLKWEEIGRFLEADRKIWRVGGELAGYVQKWKSLSNVVVLGAGHLLPNDQALNSQAMIEDWVLDKGVFGVDDEDDDAQEKRHFI 456
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1526872 1528620 - Sed0020091.1 Sed06g0201 716744

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g0201 456 ProSitePatterns Serine carboxypeptidases, serine active site. 176 183 IPR018202 GO:0004185(InterPro)
Sed06g0201 456 PRINTS Carboxypeptidase C serine protease (S10) family signature 127 137 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Sed06g0201 456 PRINTS Carboxypeptidase C serine protease (S10) family signature 406 419 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Sed06g0201 456 PRINTS Carboxypeptidase C serine protease (S10) family signature 114 126 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Sed06g0201 456 PRINTS Carboxypeptidase C serine protease (S10) family signature 162 187 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Sed06g0201 456 Pfam Serine carboxypeptidase 36 434 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
Sed06g0201 456 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 41 433 IPR001563 GO:0004185(PANTHER)|GO:0004185(InterPro)|GO:0006508(InterPro)
Sed06g0201 456 FunFam Carboxypeptidase 24 441 - -
Sed06g0201 456 SUPERFAMILY alpha/beta-Hydrolases 30 436 IPR029058 -
Sed06g0201 456 Gene3D alpha/beta hydrolase 27 446 IPR029058 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g0201 K09645 - - csv:101205133 719.539
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g1252 Sed-Chr5:21685031 Sed06g0201 Sed-Chr6:1526872 1.20E-28 dispersed
Sed06g0201 Sed-Chr6:1526872 Sed11g1307 Sed-Chr11:28807413 1.90E-50 dispersed
Sed06g0201 Sed-Chr6:1526872 Sed01g2891 Sed-Chr1:24600723 8.50E-51 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g424 . . . . . . . . . . . . . . Sed06g0201 . . Bhi07g00299 Tan04g1602 Cmetu10g0245 . Hepe01g0476 . . . . . . . . . . . . . Lsi04g01160 . . Cme10g01534 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011448 0 2 1 0 0 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 2 1 1 1 1 1 1 2 31