Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g0204 ATGGTTGACAAGGAATTTTTCACTGAATATGGTGAAGCTACTCAATATGAAATTGAAGAAGTGATAGGTAAAGGGAGCTATGGGGTTGTTGCATCTGCCATAGACACTCACTCTGGTGAGAAAGTTGCTATCAAGAAGATTAATAATGTCTTCGAGCATGTTTCGGACGCCACTCGGATACTAAGAGAAATTAAGCTTCTTCGGTTTCTCCATCATCCTGATATTGTTGATATTAAACAGATAATACTCCCTCCATGCAGACGGGAGTTTAAAGATTTGTACATTGTTTTTGAGTTGATGGAATCTGACCTTCATCATGTACTCAAGGTTAATGATGATCTTACCCCTCAACATCATCAATTTTTCTTGTATCAACTTCTTAGAGCCTTGAAGTTTATTCATTCAGCACATGTGTTCCATAGGGATTTGAAGCCGAAGAATATACTTGCCAATGCAGACTGCAAACTGAAGATCTGTGACTTTGGGCTTGCTCGTGTTTCTTTTAATGATGCCCCATCTGCTATTTTTTGGACTGATTATGTGGCTACTCGATGGTACCGTGCTCCTGAACTCTGTGGTTCTTTTTTCTCAAAGTATACACCAGCAATTGATATCTGGAGCATAGGATGTATATTTGCTGAAATGTTAGCAGGCAAGCCATTGTTTCCTGGAAAAAGTGTTGTCCATGAGCTGGATCTAATAACTGACTTACTTGGTACACCTTCGGCTGAATGTATTGCTAAGATTCGTAATGAAAAAGCTAAAAGATATTTGAATGGAATGAAAAAAAAGCTTCCAACTCCTCTGTCCAGAAAGTTCCCTCATGCAGATCCACTAGCTCTTCGTTTACTTGAACGTCTACTTGCGTTCGATCCTGATGATCGTCCATCTGCAGAGGAGGCATTAGCTGATCCATATTTCCATGGTCTGACGAATTTGGAGGATGAACCATCCAGGCAACCCATTTCAAAACTTGAGTTTGAGTTTGAAAGGAGAAAGTTGACCAAAGATGATGTTAGAGAGCTTATTTATAGAGAAATTTTGGAGTATCATCCTCAAATGCTGCAGGAGTACCTTCAAGGTTCTGAGAGTCACTTCTTGTATCCCAGTGGAATTGATCGATTCAAGAGTCAATTCGATCATCTCGAGGAACATTCTGATAAAGGTGGGAGAGGCAGTCCATTCCGAATCCTAAGGAAATATGTCTCTTTGCCCAGGGAGCGAATATGTGCACCAAGAGATGGAGATGATGATGAAAATTGTAGAACAGAACAGCGATATGCGACTTCGACTGAACGTATAATGGTTCAAAGCCCTCATGGACCTGGTTATTCATTAACTGCCCTGAATGGTTCTGTTCAGGTTGACTGCAGTAATTATAACCTGTTGAGGAGTGCAAGTATTAGCTGTTCTAAATGGGTGGATTAA 1428 40.34 MVDKEFFTEYGEATQYEIEEVIGKGSYGVVASAIDTHSGEKVAIKKINNVFEHVSDATRILREIKLLRFLHHPDIVDIKQIILPPCRREFKDLYIVFELMESDLHHVLKVNDDLTPQHHQFFLYQLLRALKFIHSAHVFHRDLKPKNILANADCKLKICDFGLARVSFNDAPSAIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEMLAGKPLFPGKSVVHELDLITDLLGTPSAECIAKIRNEKAKRYLNGMKKKLPTPLSRKFPHADPLALRLLERLLAFDPDDRPSAEEALADPYFHGLTNLEDEPSRQPISKLEFEFERRKLTKDDVRELIYREILEYHPQMLQEYLQGSESHFLYPSGIDRFKSQFDHLEEHSDKGGRGSPFRILRKYVSLPRERICAPRDGDDDENCRTEQRYATSTERIMVQSPHGPGYSLTALNGSVQVDCSNYNLLRSASISCSKWVD 475
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1538295 1543946 - Sed0027276.2 Sed06g0204 716747
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g0204 475 Pfam Protein kinase domain 16 307 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed06g0204 475 FunFam Mitogen-activated protein kinase 102 330 - -
Sed06g0204 475 FunFam Mitogen-activated protein kinase 5 108 - -
Sed06g0204 475 FunFam Mitogen-activated protein kinase 331 353 - -
Sed06g0204 475 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 13 348 IPR050117 GO:0004674(PANTHER)|GO:0004707(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0035556(PANTHER)
Sed06g0204 475 Gene3D Phosphorylase Kinase; domain 1 32 353 - -
Sed06g0204 475 SMART serkin_6 16 307 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed06g0204 475 ProSiteProfiles Protein kinase domain profile. 16 307 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed06g0204 475 CDD STKc_TDY_MAPK 15 352 - -
Sed06g0204 475 SUPERFAMILY Protein kinase-like (PK-like) 13 312 IPR011009 -
Sed06g0204 475 ProSitePatterns MAP kinase signature. 51 154 IPR003527 GO:0004707(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed06g0204 475 Gene3D Transferase(Phosphotransferase) domain 1 102 330 - -
Sed06g0204 475 ProSitePatterns Protein kinases ATP-binding region signature. 22 46 IPR017441 GO:0005524(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1760 Sed-Chr1:12815884 Sed06g0204 Sed-Chr6:1538295 9.10E-179 dispersed
Sed06g0204 Sed-Chr6:1538295 Sed06g0206 Sed-Chr6:1539806 2.60E-212 dispersed
Sed06g0204 Sed-Chr6:1538295 Sed06g0205 Sed-Chr6:1538295 1.40E-282 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79331 PF00069 Pkinase 2.30E-66 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g0204 - - - 0.0