Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed06g0204 | ATGGTTGACAAGGAATTTTTCACTGAATATGGTGAAGCTACTCAATATGAAATTGAAGAAGTGATAGGTAAAGGGAGCTATGGGGTTGTTGCATCTGCCATAGACACTCACTCTGGTGAGAAAGTTGCTATCAAGAAGATTAATAATGTCTTCGAGCATGTTTCGGACGCCACTCGGATACTAAGAGAAATTAAGCTTCTTCGGTTTCTCCATCATCCTGATATTGTTGATATTAAACAGATAATACTCCCTCCATGCAGACGGGAGTTTAAAGATTTGTACATTGTTTTTGAGTTGATGGAATCTGACCTTCATCATGTACTCAAGGTTAATGATGATCTTACCCCTCAACATCATCAATTTTTCTTGTATCAACTTCTTAGAGCCTTGAAGTTTATTCATTCAGCACATGTGTTCCATAGGGATTTGAAGCCGAAGAATATACTTGCCAATGCAGACTGCAAACTGAAGATCTGTGACTTTGGGCTTGCTCGTGTTTCTTTTAATGATGCCCCATCTGCTATTTTTTGGACTGATTATGTGGCTACTCGATGGTACCGTGCTCCTGAACTCTGTGGTTCTTTTTTCTCAAAGTATACACCAGCAATTGATATCTGGAGCATAGGATGTATATTTGCTGAAATGTTAGCAGGCAAGCCATTGTTTCCTGGAAAAAGTGTTGTCCATGAGCTGGATCTAATAACTGACTTACTTGGTACACCTTCGGCTGAATGTATTGCTAAGATTCGTAATGAAAAAGCTAAAAGATATTTGAATGGAATGAAAAAAAAGCTTCCAACTCCTCTGTCCAGAAAGTTCCCTCATGCAGATCCACTAGCTCTTCGTTTACTTGAACGTCTACTTGCGTTCGATCCTGATGATCGTCCATCTGCAGAGGAGGCATTAGCTGATCCATATTTCCATGGTCTGACGAATTTGGAGGATGAACCATCCAGGCAACCCATTTCAAAACTTGAGTTTGAGTTTGAAAGGAGAAAGTTGACCAAAGATGATGTTAGAGAGCTTATTTATAGAGAAATTTTGGAGTATCATCCTCAAATGCTGCAGGAGTACCTTCAAGGTTCTGAGAGTCACTTCTTGTATCCCAGTGGAATTGATCGATTCAAGAGTCAATTCGATCATCTCGAGGAACATTCTGATAAAGGTGGGAGAGGCAGTCCATTCCGAATCCTAAGGAAATATGTCTCTTTGCCCAGGGAGCGAATATGTGCACCAAGAGATGGAGATGATGATGAAAATTGTAGAACAGAACAGCGATATGCGACTTCGACTGAACGTATAATGGTTCAAAGCCCTCATGGACCTGGTTATTCATTAACTGCCCTGAATGGTTCTGTTCAGGTTGACTGCAGTAATTATAACCTGTTGAGGAGTGCAAGTATTAGCTGTTCTAAATGGGTGGATTAA | 1428 | 40.34 | MVDKEFFTEYGEATQYEIEEVIGKGSYGVVASAIDTHSGEKVAIKKINNVFEHVSDATRILREIKLLRFLHHPDIVDIKQIILPPCRREFKDLYIVFELMESDLHHVLKVNDDLTPQHHQFFLYQLLRALKFIHSAHVFHRDLKPKNILANADCKLKICDFGLARVSFNDAPSAIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEMLAGKPLFPGKSVVHELDLITDLLGTPSAECIAKIRNEKAKRYLNGMKKKLPTPLSRKFPHADPLALRLLERLLAFDPDDRPSAEEALADPYFHGLTNLEDEPSRQPISKLEFEFERRKLTKDDVRELIYREILEYHPQMLQEYLQGSESHFLYPSGIDRFKSQFDHLEEHSDKGGRGSPFRILRKYVSLPRERICAPRDGDDDENCRTEQRYATSTERIMVQSPHGPGYSLTALNGSVQVDCSNYNLLRSASISCSKWVD | 475 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 1538295 | 1543946 | - | Sed0027276.2 | Sed06g0204 | 716747 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed06g0204 | 475 | Pfam | Protein kinase domain | 16 | 307 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed06g0204 | 475 | FunFam | Mitogen-activated protein kinase | 102 | 330 | - | - | |
Sed06g0204 | 475 | FunFam | Mitogen-activated protein kinase | 5 | 108 | - | - | |
Sed06g0204 | 475 | FunFam | Mitogen-activated protein kinase | 331 | 353 | - | - | |
Sed06g0204 | 475 | PANTHER | MITOGEN-ACTIVATED PROTEIN KINASE | 13 | 348 | IPR050117 | GO:0004674(PANTHER)|GO:0004707(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0035556(PANTHER) | |
Sed06g0204 | 475 | Gene3D | Phosphorylase Kinase; domain 1 | 32 | 353 | - | - | |
Sed06g0204 | 475 | SMART | serkin_6 | 16 | 307 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed06g0204 | 475 | ProSiteProfiles | Protein kinase domain profile. | 16 | 307 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed06g0204 | 475 | CDD | STKc_TDY_MAPK | 15 | 352 | - | - | |
Sed06g0204 | 475 | SUPERFAMILY | Protein kinase-like (PK-like) | 13 | 312 | IPR011009 | - | |
Sed06g0204 | 475 | ProSitePatterns | MAP kinase signature. | 51 | 154 | IPR003527 | GO:0004707(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed06g0204 | 475 | Gene3D | Transferase(Phosphotransferase) domain 1 | 102 | 330 | - | - | |
Sed06g0204 | 475 | ProSitePatterns | Protein kinases ATP-binding region signature. | 22 | 46 | IPR017441 | GO:0005524(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed01g1760 | Sed-Chr1:12815884 | Sed06g0204 | Sed-Chr6:1538295 | 9.10E-179 | dispersed | |
Sed06g0204 | Sed-Chr6:1538295 | Sed06g0206 | Sed-Chr6:1539806 | 2.60E-212 | dispersed | |
Sed06g0204 | Sed-Chr6:1538295 | Sed06g0205 | Sed-Chr6:1538295 | 1.40E-282 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
79331 | PF00069 | Pkinase | 2.30E-66 | CL0016 | Sed | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed06g0204 | - | - | - | 0.0 |