Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed06g0206 ATGGTTGACAAGGAATTTTTCACTGAATATGGTGAAGCTACTCAATATGAAATTGAAGAAGTGATAGGTAAAGGGAGCTATGGGGTTGTTGCATCTGCCATAGACACTCACTCTGCACATGTGTTCCATAGGGATTTGAAGCCGAAGAATATACTTGCCAATGCAGACTGCAAACTGAAGATCTGTGACTTTGGGCTTGCTCGTGTTTCTTTTAATGATGCCCCATCTGCTATTTTTTGGACTGATTATGTGGCTACTCGATGGTACCGTGCTCCTGAACTCTGTGGTTCTTTTTTCTCAAAGTATACACCAGCAATTGATATCTGGAGCATAGGATGTATATTTGCTGAAATGTTAGCAGGCAAGCCATTGTTTCCTGGAAAAAGTGTTGTCCATGAGCTGGATCTAATAACTGACTTACTTGGTACACCTTCGGCTGAATGTATTGCTAAGATTCGTAATGAAAAAGCTAAAAGATATTTGAATGGAATGAAAAAAAAGCTTCCAACTCCTCTGTCCAGAAAGTTCCCTCATGCAGATCCACTAGCTCTTCGTTTACTTGAACGTCTACTTGCGTTCGATCCTGATGATCGTCCATCTGCAGAGGAGGCATTAGCTGATCCATATTTCCATGGTCTGACGAATTTGGAGGATGAACCATCCAGGCAACCCATTTCAAAACTTGAGTTTGAGTTTGAAAGGAGAAAGTTGACCAAAGATGATGTTAGAGAGCTTATTTATAGAGAAATTTTGGAGTATCATCCTCAAATGCTGCAGGAGTACCTTCAAGGTTCTGAGAGTCACTTCTTGTATCCCAGTGGAATTGATCGATTCAAGAGTCAATTCGATCATCTCGAGGAACATTCTGATAAAGGTGGGAGAGGCAGTCCATTCCGAATCCTAAGGAAATATGTCTCTTTGCCCAGGGAGCGAATATGTGCACCAAGAGATGGAGATGATGATGAAAATTGTAGAACAGAACAGCGATATGCGACTTCGACTGAACGTATAATGGTTCAAAGCCCTCATGGACCTGGTTATTCATTAACTGCCCTGAATGGTTCTGTTCAGGTTGACTGCAGTAATTATAACCTGTTGAGGAGTGCAAGTATTAGCTGTTCTAAATGGGTGGATTAA 1137 41.34 MVDKEFFTEYGEATQYEIEEVIGKGSYGVVASAIDTHSAHVFHRDLKPKNILANADCKLKICDFGLARVSFNDAPSAIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEMLAGKPLFPGKSVVHELDLITDLLGTPSAECIAKIRNEKAKRYLNGMKKKLPTPLSRKFPHADPLALRLLERLLAFDPDDRPSAEEALADPYFHGLTNLEDEPSRQPISKLEFEFERRKLTKDDVRELIYREILEYHPQMLQEYLQGSESHFLYPSGIDRFKSQFDHLEEHSDKGGRGSPFRILRKYVSLPRERICAPRDGDDDENCRTEQRYATSTERIMVQSPHGPGYSLTALNGSVQVDCSNYNLLRSASISCSKWVD 378
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1539806 1543598 - Sed0027276.1 Sed06g0206 716749
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed06g0206 378 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 37 251 IPR050117 GO:0004674(PANTHER)|GO:0004707(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0035556(PANTHER)
Sed06g0206 378 Gene3D Transferase(Phosphotransferase) domain 1 29 233 - -
Sed06g0206 378 FunFam Mitogen-activated protein kinase 24 233 - -
Sed06g0206 378 Gene3D Phosphorylase Kinase; domain 1 234 256 - -
Sed06g0206 378 FunFam Mitogen-activated protein kinase 234 256 - -
Sed06g0206 378 Pfam Protein kinase domain 37 210 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed06g0206 378 SMART serkin_6 16 210 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed06g0206 378 SUPERFAMILY Protein kinase-like (PK-like) 14 226 IPR011009 -
Sed06g0206 378 ProSiteProfiles Protein kinase domain profile. 1 210 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g0204 Sed-Chr6:1538295 Sed06g0206 Sed-Chr6:1539806 2.60E-212 dispersed
Sed06g0206 Sed-Chr6:1539806 Sed12g2110 Sed-Chr12:31783363 5.30E-139 dispersed
Sed06g0205 Sed-Chr6:1538295 Sed06g0206 Sed-Chr6:1539806 2.60E-212 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79333 PF00069 Pkinase 1.40E-36 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed06g0206 - - - 0.0