Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed06g0206 | ATGGTTGACAAGGAATTTTTCACTGAATATGGTGAAGCTACTCAATATGAAATTGAAGAAGTGATAGGTAAAGGGAGCTATGGGGTTGTTGCATCTGCCATAGACACTCACTCTGCACATGTGTTCCATAGGGATTTGAAGCCGAAGAATATACTTGCCAATGCAGACTGCAAACTGAAGATCTGTGACTTTGGGCTTGCTCGTGTTTCTTTTAATGATGCCCCATCTGCTATTTTTTGGACTGATTATGTGGCTACTCGATGGTACCGTGCTCCTGAACTCTGTGGTTCTTTTTTCTCAAAGTATACACCAGCAATTGATATCTGGAGCATAGGATGTATATTTGCTGAAATGTTAGCAGGCAAGCCATTGTTTCCTGGAAAAAGTGTTGTCCATGAGCTGGATCTAATAACTGACTTACTTGGTACACCTTCGGCTGAATGTATTGCTAAGATTCGTAATGAAAAAGCTAAAAGATATTTGAATGGAATGAAAAAAAAGCTTCCAACTCCTCTGTCCAGAAAGTTCCCTCATGCAGATCCACTAGCTCTTCGTTTACTTGAACGTCTACTTGCGTTCGATCCTGATGATCGTCCATCTGCAGAGGAGGCATTAGCTGATCCATATTTCCATGGTCTGACGAATTTGGAGGATGAACCATCCAGGCAACCCATTTCAAAACTTGAGTTTGAGTTTGAAAGGAGAAAGTTGACCAAAGATGATGTTAGAGAGCTTATTTATAGAGAAATTTTGGAGTATCATCCTCAAATGCTGCAGGAGTACCTTCAAGGTTCTGAGAGTCACTTCTTGTATCCCAGTGGAATTGATCGATTCAAGAGTCAATTCGATCATCTCGAGGAACATTCTGATAAAGGTGGGAGAGGCAGTCCATTCCGAATCCTAAGGAAATATGTCTCTTTGCCCAGGGAGCGAATATGTGCACCAAGAGATGGAGATGATGATGAAAATTGTAGAACAGAACAGCGATATGCGACTTCGACTGAACGTATAATGGTTCAAAGCCCTCATGGACCTGGTTATTCATTAACTGCCCTGAATGGTTCTGTTCAGGTTGACTGCAGTAATTATAACCTGTTGAGGAGTGCAAGTATTAGCTGTTCTAAATGGGTGGATTAA | 1137 | 41.34 | MVDKEFFTEYGEATQYEIEEVIGKGSYGVVASAIDTHSAHVFHRDLKPKNILANADCKLKICDFGLARVSFNDAPSAIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEMLAGKPLFPGKSVVHELDLITDLLGTPSAECIAKIRNEKAKRYLNGMKKKLPTPLSRKFPHADPLALRLLERLLAFDPDDRPSAEEALADPYFHGLTNLEDEPSRQPISKLEFEFERRKLTKDDVRELIYREILEYHPQMLQEYLQGSESHFLYPSGIDRFKSQFDHLEEHSDKGGRGSPFRILRKYVSLPRERICAPRDGDDDENCRTEQRYATSTERIMVQSPHGPGYSLTALNGSVQVDCSNYNLLRSASISCSKWVD | 378 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 1539806 | 1543598 | - | Sed0027276.1 | Sed06g0206 | 716749 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed06g0206 | 378 | PANTHER | MITOGEN-ACTIVATED PROTEIN KINASE | 37 | 251 | IPR050117 | GO:0004674(PANTHER)|GO:0004707(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0035556(PANTHER) | |
Sed06g0206 | 378 | Gene3D | Transferase(Phosphotransferase) domain 1 | 29 | 233 | - | - | |
Sed06g0206 | 378 | FunFam | Mitogen-activated protein kinase | 24 | 233 | - | - | |
Sed06g0206 | 378 | Gene3D | Phosphorylase Kinase; domain 1 | 234 | 256 | - | - | |
Sed06g0206 | 378 | FunFam | Mitogen-activated protein kinase | 234 | 256 | - | - | |
Sed06g0206 | 378 | Pfam | Protein kinase domain | 37 | 210 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed06g0206 | 378 | SMART | serkin_6 | 16 | 210 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed06g0206 | 378 | SUPERFAMILY | Protein kinase-like (PK-like) | 14 | 226 | IPR011009 | - | |
Sed06g0206 | 378 | ProSiteProfiles | Protein kinase domain profile. | 1 | 210 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed06g0204 | Sed-Chr6:1538295 | Sed06g0206 | Sed-Chr6:1539806 | 2.60E-212 | dispersed | |
Sed06g0206 | Sed-Chr6:1539806 | Sed12g2110 | Sed-Chr12:31783363 | 5.30E-139 | dispersed | |
Sed06g0205 | Sed-Chr6:1538295 | Sed06g0206 | Sed-Chr6:1539806 | 2.60E-212 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
79333 | PF00069 | Pkinase | 1.40E-36 | CL0016 | Sed | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed06g0206 | - | - | - | 0.0 |